Macadamia integrifolia (macadamia nut): 122061150
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Entry
122061150 CDS
T07436
Name
(RefSeq) LOW QUALITY PROTEIN: U4/U6 small nuclear ribonucleoprotein PRP4-like protein
KO
K12662
U4/U6 small nuclear ribonucleoprotein PRP4
Organism
ming
Macadamia integrifolia (macadamia nut)
Pathway
ming03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ming00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122061150
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ming03041
]
122061150
Spliceosome [BR:
ming03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
122061150
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40
WD40_WDHD1_1st
WD40_CDC20-Fz
EIF3I
Beta-prop_EML_2
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_2nd
WDR55
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_1st
Beta-prop_EML
Beta-prop_WDR75_1st
Beta-prop_TEP1_C
ANAPC4_WD40
WDR90_beta-prop_4th
Beta-prop_IFT122_1st
NBCH_WD40
Beta-prop_DCAF4
Beta-prop_Vps41
Beta-prop_WDR19_1st
WD_LRWD1
Beta-prop_SCAP
Beta-prop_EIPR1
WD40_RFWD3
Beta-prop_RIG_2nd
eIF2A
Beta-prop_SPT8
WD40_like
PEP5_VPS11_N
Motif
Other DBs
NCBI-GeneID:
122061150
NCBI-ProteinID:
XP_042480286
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Position
14:complement(24058731..24062423)
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AA seq
410 aa
AA seq
DB search
MERRERLRMIMVKLEAEGQLEKLLKAHEDEEAATSVAAGEGDGEGPQESPFFTEGSRELL
EARVNIGRYSIVKAALRLERARRRRDDPDEDLDAEMDSALKLLQTSSLVLDCSEIGDDRP
LSGCSFSRDGKLLATSALSGVAKLWSMPQVNKVTALKGHTEHATDIAFSPVHSHIATASA
DRTARLWNTEGYVLRTFEGHLDRLARLAFHPSGKYLGTASFDKTWRLWDVEIGVELLLQE
GHSRSVYGICFHRDGSLVASCGLDALVRVWDLRTGRSILALEGHVKPVLGISFSPDGYHL
ASGSEDNTCRIWDLRKKKSLYIIPAHSNLISQVKFEPQEGYFLATASYDMTAKVWSARDF
RPVKTLSGHEGKVTSLDIVGEGQYIATVAHDRTIKLWSSRSAKENDMAVD
NT seq
1233 nt
NT seq
+upstream
nt +downstream
nt
atggaaaggagggagaggctgcgaatgattatggtgaagcttgaagctgaaggacagttg
gagaagctgttgaaagctcatgaggatgaggaggctgctacttctgtagcggcaggtgag
ggtgacggagaagggcctcaagagtccccattttttactgaagggtcaagagaactttta
gaggctcgggttaatatcggtaggtattctattgtgaaggctgccttgcggcttgaacgt
gcaaggaggagaagggatgatccagatgaagatcttgatgcagagatggattcagctctc
aagctacttcagacaagtagcttggtcctcgactgcagtgaaattggtgatgatcgacca
ctctctggttgttccttttcacgagatgggaagctgcttgccaccagtgccttgagtgga
gttgctaaattgtggagcatgcctcaagtaaataaggtcactgccttaaagggtcataca
gagcatgccactgacattgcattttctcctgtccatagccacatagcaactgcttctgct
gatcggactgctaggttatggaacactgaaggttatgttcttaggacatttgaggggcat
cttgatcgtcttgcacgtcttgcattccatccatccgggaagtacttagggacagctagc
tttgacaagacttggaggttgtgggatgttgaaattggtgttgagttgcttcttcaagaa
ggtcatagcaggagtgtctatgggatatgtttccaccgtgatgggtctttggtggcgtca
tgtgggttagatgcacttgttcgagtgtgggacctccgtacgggaagaagtattcttgca
ttggaaggacatgttaagccggtactaggaatcagcttttctcccgatggatatcactta
gcctctggcagtgaggataatacctgccgaatctgggatttgagaaagaagaaatcctta
tacataataccagctcactcaaaccttatctcacaagtaaaatttgagcctcaagaagga
tattttctggcaactgcttcatatgatatgacggccaaggtgtggtcagctcgagacttc
agacctgtcaagacattatctggacatgaaggaaaagttacatcattagatatagtggga
gaaggacagtatattgcaacagttgcacatgatcggactatcaagttgtggtcaagcaga
agtgcaaaggaaaatgatatggctgtcgattaa
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