Macadamia integrifolia (macadamia nut): 122061582
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Entry
122061582 CDS
T07436
Name
(RefSeq) probable RNA helicase SDE3
KO
K18422
helicase MOV-10 [EC:
5.6.2.5
]
Organism
ming
Macadamia integrifolia (macadamia nut)
Brite
KEGG Orthology (KO) [BR:
ming00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ming03019
]
122061582
03036 Chromosome and associated proteins [BR:
ming03036
]
122061582
Enzymes [BR:
ming01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.5 RNA 5'-3' helicase
122061582
Messenger RNA biogenesis [BR:
ming03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
122061582
Chromosome and associated proteins [BR:
ming03036
]
Eukaryotic type
Gene silencing
microRNA pathway
Other miRNA pathway proteins
122061582
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_12
AAA_11
MOV-10_beta-barrel
AAA_30
AAA_19
ResIII
UvrD-helicase
AAA_16
AAA_22
PhoH
Helicase_RecD
AAA
TRAPPC13_N
SLFN-g3_helicase
ATPase_2
Mov-10_helical
DEAD
nSTAND3
NPHP3_N
Motif
Other DBs
NCBI-GeneID:
122061582
NCBI-ProteinID:
XP_042480863
LinkDB
All DBs
Position
14:complement(25996546..26009275)
Genome browser
AA seq
880 aa
AA seq
DB search
MGSIRGDDWDEECSYIGDKGEIGFIDYEDDKSVCSYNPHDEGPIVISVPFPFNRGKPQSV
FVGETAAHSITIHNTTSEPVELWAVKIYCSTPADSYTLSLMEPPSVNSDMETIRGFLESF
SLEDRVLQPGQILKIWLSCKPKDIGLHTTVVHFDVGDDRIERVVFLLVEDKVAQSLSADK
PYSRAPRRKQFAVKEYVAGSRPARGAPIRSFKYRLPHYEIPKDLRDMLESKKVPYVITEG
LTRENYVEYFNVLLIMEELHMEEEMRGHDMECVTMKKRGAQFLALEVPGLAEKRPSLVYG
DYVFAKLAASDLDDNAPPYQGFIHRVEADEVLLKFADEFHQRHCDTNMYNVRFSYNRVNM
RRQYQAVSSAQSLDNVLLFPSQRSNKRVIDTNPMVPLNQTLNEEQMVSVEMILGCKGAPP
YVIHGPPGTGKTMTLVEAILQLYTNGKTARILVCAASNCAADHILERLTSKDIIEVRENE
IFRLNAQNRPYEDLHPDHIRFCFFEDLIFKCPPLRALMRYRIIVSTYMSASLLYGEGIKR
GHFSHIFLDEAGQASEPETMIPISHLCRRETIVVLAGDPMQLGPVVYSRDAETYGLGKSY
LERLFECECYYSEDGNFVTKLVRNYRCHPSILELPSRLFYKGELIACKEETNASMCSWLD
ILPNKEFPVMFIGIQGCDEREGNNPSWFNRIEASKVVEIITKLRTMGDVNESDVGIITPY
RQQVLKLKKALENLDMLDLKVGSVEQFQGQEREFIIVSTVRSTVKHNEFDRAHCLGFLSN
PRRFNVAITRAKSLLIIVGNPHIICKDPYWAKILWHCSDNNSYQGCPLPERLEDPKEYWD
GEDNTQPSDNAAWGDESFQPQVEETPQPVTDEAEWSDGWK
NT seq
2643 nt
NT seq
+upstream
nt +downstream
nt
atgggtagcattaggggtgacgattgggatgaggaatgctcttacattggagacaaagga
gagattggatttattgattacgaggatgataaatcagtatgcagctacaatccgcatgat
gaaggcccaattgttatttctgtcccattcccttttaaccgtggaaagcctcaatccgta
tttgtaggggaaacagctgcacattctatcacgatacataataccacctctgaaccagtt
gaactttgggcagttaagatttactgttcaacccctgcagactcttacacactatcgttg
atggaacctccttcagtgaattcagatatggagaccattcgaggcttcttagaatctttt
tccttggaagatagagtccttcagccaggccagattctcaaaatatggttatcatgcaaa
ccgaaggacattggtttgcacacgacagtggtgcattttgatgttggtgatgacaggata
gagcgggttgtttttcttttggttgaagataaggttgcccaatctctgtctgcagacaag
ccatattcaagagccccccgaaggaaacaatttgcagttaaggagtatgtggcaggttct
cgtcctgcaaggggagcaccaatacgaagtttcaagtataggcttcctcattatgagatc
ccaaaagaccttagggatatgttggagagtaaaaaagtcccttatgttatcacagaaggt
ctaacaagggagaattatgttgaatacttcaatgttttattgattatggaagaattacat
atggaggaagaaatgaggggccatgacatggaatgtgtcaccatgaagaagaggggagct
caattcttggcccttgaggtacctggactggctgagaaaagaccttcattggtctacggt
gactatgtttttgccaagcttgctgcttcagatctagatgacaatgccccaccatatcag
gggttcatacatcgtgttgaggctgacgaagtgttgttgaagtttgccgatgaattccac
cagcggcactgtgacactaacatgtacaatgttagattcagttacaatagggtgaatatg
agaaggcaatatcaggctgtttcttcagcacaaagtttagacaatgttctcctctttcca
tcgcaacgatccaataagagggtgatcgatacaaacccaatggttcccttgaatcaaact
ctcaatgaagagcaaatggtttcggttgaaatgatactgggttgcaaaggagcaccacct
tatgtgattcatgggccaccaggtacaggtaaaaccatgacattggtggaagcaatctta
cagctttatacaaatggaaagacagccaggattcttgtttgtgcggcctctaattgtgca
gcagatcacatattagagaggctcacctctaaggatattattgaagttcgggagaatgag
atattcaggttaaatgctcaaaaccgtccttatgaggaccttcaccctgaccatatccgt
ttttgcttctttgaggatctgatcttcaagtgtcctccattgagggctttgatgcgctac
aggatcattgtatccacttatatgagtgcatctctgctatatggtgaaggcatcaaacga
ggccacttctctcatattttcttggatgaggctggccaagcttctgagccagagacaatg
atccctatttcacatctttgccgaagggaaactattgttgttttggctggagatccaatg
caattaggccccgttgtctactccagagatgcagagacatacggtttaggaaaatcatac
ctagaaaggctctttgaatgtgaatgctactacagtgaggatggaaattttgtcacaaaa
ctggtgaggaattatcgatgccatccatcaatcctggaattaccttcaaggctcttctat
aagggggaattgattgcctgtaaagaagagacaaatgcctctatgtgttcttggttggat
atccttcctaacaaagagtttccagttatgttcattggaattcaaggatgtgatgaaagg
gaaggaaataatccatcgtggtttaatcgaattgaggctagcaaggttgtagagatcatc
acgaagctgagaacaatgggcgatgtgaacgagtcagatgttgggataataactccttat
cgccagcaagtacttaagttaaagaaagcccttgaaaatctggatatgctggatctaaag
gttgggagtgtggaacaatttcagggacaagaaagggaattcataattgtctctactgtc
agatctacagtcaagcacaatgaatttgatagagcacattgtttgggatttcttagcaat
cccaggagatttaatgttgctattactcgtgcgaaatctttgctcataattgttggtaac
ccgcatattatctgcaaggatccatattgggctaagattttatggcattgctctgacaac
aactcttatcagggttgtcctctccctgaaaggctagaggatcccaaggaatattgggat
ggtgaagacaatacacagccctctgacaatgcagcatggggtgatgaatccttccagccc
caggtagaagagacacctcagccagttactgatgaagctgaatggtcagatgggtggaag
taa
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