Macadamia integrifolia (macadamia nut): 122062084
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Entry
122062084 CDS
T07436
Name
(RefSeq) polyadenylation and cleavage factor homolog 4-like
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
ming
Macadamia integrifolia (macadamia nut)
Pathway
ming03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ming00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
122062084
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ming03021
]
122062084
03019 Messenger RNA biogenesis [BR:
ming03019
]
122062084
Transcription machinery [BR:
ming03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
122062084
Messenger RNA biogenesis [BR:
ming03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
122062084
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf_PCFS4
CID
zf-C2H2_4
Motif
Other DBs
NCBI-GeneID:
122062084
NCBI-ProteinID:
XP_042481661
LinkDB
All DBs
Position
2:complement(9747208..9760855)
Genome browser
AA seq
1057 aa
AA seq
DB search
MEMEGSRRSIDRSREPGLKKPRLSEETERDRSFNGVVDRDRDRAFQQRLSTVGSGPGAGP
LLSRFKTNERERNVERDEPVRGVYQQQQQQQLQELVSQYKTALAELTFNSKPIITNLTII
AGENLHAAKGIAATVCANILEVPSEQKLPSLYLLDSIVKNIGRDYIKHFATRLPEVFCKA
YRQVDSSVHSGMRHLFGTWKGVFPPATLQKIEKELGFSPAMNGSSSGISESRPDSQSQRP
QHSIHVNPKYLEARQRLQQSNKNSQRPQREVLSEPVHEKNTGATYGDYEYGSDLSRHPDM
GAESGSERLTERGLDKTWYGARSSADSVVGLTNGFDARHGFSNYQAPRSTTQAVAQLQNT
PSTVNRSSRGISKNWKNSEEEEYMWDDMNFRLTDHGAPDSSRRDGWTPDDSEKLDEEHLP
QPLSEHDIGSKINRETSSDSKSMTKRGQATFGHRTSPMWSLQEPHPVDAHTGQTLMVSGG
SASLSSPFTRAGLRPQMVPSSGSAGVLGQQRHLPLGSASPSRQSPSHQDPHSPVSFALHQ
HQQSHNLSELDHPQSEHFAQPGLKPSQLAGSLNHVPQESSPVPFNQPGTQPNLQLNQSQP
PQHLQTPSPLMPFPQLRPHTPFSQQQPQPEKLPSQISGQSRKLLPQVPNFGTLTTGSSVP
SHSNSSTVEQTGESNTRSLLDAVLKKGLFSNNLGLPNLNFQESGSPSNLNIRPPLPSGPP
PIQHAGSSTPLVSPSSSASASRGNASAVTTLPQRTAVRPPLPPGPPPSSSIVGSTSTQTS
SITSATPNPLSSLLNSLVARGLISASTTESSTVTATQVPSQNQKLSPGPSTSSSMSVSLS
PAAATIPSSSGNELPFTESGAKSTTTLSQATTSELKGLIGMEFKPEIIRESHPSVISGLF
DDLSYNCNICGLRLRLKERLDRHMEWHASKKPEQSSCNMVSRRWYANLGDWIAGNVWHPS
GPTSTASIEISVNVALEESEQAVPADESQCVCVLCGELFEDFYCHERDIWMFKGAVYMII
PAGDDNGGTGGSAVQGPIVHATCASQISAYDLEQAGE
NT seq
3174 nt
NT seq
+upstream
nt +downstream
nt
atggaaatggagggttctcgtagatccattgataggtcgagggaaccaggtttaaagaaa
cctagattgtctgaggaaaccgaacgagatcgtagttttaacggcgttgttgatcgtgat
cgtgatcgagcgtttcagcagagactctctactgttggaagcggccccggtgctggacct
ttgctttcgaggtttaaaacgaacgagagggaacggaatgtggagagagatgagcctgta
cgaggagtttatcagcagcagcagcagcagcagcttcaagagcttgtcagtcagtataaa
acagctctcgcagaattgaccttcaattcaaagccaatcatcactaacctcactattata
gcgggggagaacctccatgctgccaaggggatcgctgccactgtctgtgcgaatattctt
gaggtacccagtgagcaaaagctaccatctctctaccttttagatagtattgtaaagaac
attgggagagattatattaaacacttcgctaccagactacctgaggtgttctgcaaggcc
tacagacaggttgattcttcagttcattctggtatgcggcatctttttgggacttggaaa
ggtgtatttccgcctgccactcttcagaaaatagagaaagaacttggtttctcacctgca
atgaatggctcatcttctggcatttcagaatcgaggcctgattcacaatcacaacgccct
cagcatagcattcatgtgaatcctaagtatttagaggcgaggcagcgcctgcaacagtca
aacaagaactctcaacgtccccaaagagaagtgttaagtgagcctgttcatgagaagaac
actggtgcaacttatggagattatgaatatggttctgatctttcaaggcatccggacatg
ggagcagaaagtggcagtgagaggcttactgagagaggacttgacaagacttggtatgga
gccagaagcagtgctgactcggttgttggcctcaccaatgggtttgatgcacggcatgga
ttttcaaactaccaagcacctagatctactactcaggctgttgctcagctacagaacact
ccgagcactgtaaacagaagtagcagagggatatctaagaattggaagaactcagaggaa
gaggagtacatgtgggacgatatgaacttcagattgacagatcatggggcccctgatagc
tcaaggagagatggttggactccagatgattcagaaaagctggatgaagaacaccttcca
caacctcttagcgaacatgatattgggtctaaaattaatagagaaacttcctcggattca
aaatccatgacaaagagaggacaagcaacatttgggcatcgaacatcaccaatgtggtca
ttgcaagagccacacccagtagatgcccatacaggccaaactttaatggtttcaggtggt
tcagcttctctgagtagtcctttcaccagggctgggcttcgtccccagatggttccatcg
tcgggatctgctggagttttagggcaacaacggcatcttcctttgggatctgcatcccca
tccagacagtctcccagtcaccaggatcctcattcacctgtatcttttgcacttcatcag
catcaacaatcacataatttgtctgagctagaccatccccaatcagagcactttgctcag
cctggtttgaaaccatctcagcttgcgggatcattgaatcatgtacctcaagagtcttcc
cccgtcccctttaatcagcctggtactcagccaaatttgcaattgaatcaatcacagcct
ccccaacatctacaaactccatctcctttgatgccttttcctcaactaaggcctcatact
cccttctcacagcagcagcctcagccagagaaattgccgtctcaaatatcgggtcagtcc
cgtaagctactgcctcaagtaccaaattttggaactctaacaacaggctcttctgtgcct
agccattctaatagttccaccgtggagcaaactggagaatcaaacactagaagtttgttg
gatgcagttttgaaaaagggactgttctcaaacaacttaggcctccccaatcttaatttc
caggagtcggggtcgccatctaatttgaacatacggccccccctgccaagtggtcctccc
ccaatccagcatgctggatcatctactcctttggtttcaccatcttcttcagcttcagct
tcccgtgggaatgcatcagctgtaacgacactccctcagagaacagctgtccggcctcct
ttgcctcctggacctccaccttcctcatctattgttggtagcacatcaacgcagacatca
agtataaccagtgctactcccaatcctctttcaagtcttttgaattcattagttgcacgg
ggcttgatatctgcatcaacgacagagtcatcaactgttactgctacccaggtgcctagt
caaaaccaaaagctgagtcctggtccaagtaccagtagttccatgtcagtttccctgagt
ccagctgctgcaaccatcccttcatcttctgggaatgaacttccttttacagaatctggc
gcaaagagcacaactaccttgtctcaagccaccacaagtgaattgaagggcctcatcggg
atggagtttaagccggagattatccgggaatcacatccatcagttatcagtggcctcttt
gatgacctttcctataattgcaatatctgtggtcttcgacttagacttaaagaaagactt
gatagacatatggagtggcatgcttcaaagaagcctgaacaaagtagttgcaatatggtt
tcaaggagatggtatgcaaatttgggcgactggattgcaggtaacgtatggcatccatct
ggacctacttccactgcttcaattgaaatttcagtgaatgtagcattggaggaaagtgaa
caggcagtacctgctgatgaaagccagtgtgtgtgtgtcttgtgtggagagctgtttgag
gatttctactgtcatgaaagagacatatggatgttcaaaggagcggtgtatatgatcatt
ccagctggggatgacaatggaggaactggtgggagtgctgtccagggtcctattgtgcat
gcaacctgtgcttcacaaatttctgcttatgacttggaacaggcaggtgaatga
DBGET
integrated database retrieval system
