Macadamia integrifolia (macadamia nut): 122064390
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Entry
122064390 CDS
T07436
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 15-like
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
ming
Macadamia integrifolia (macadamia nut)
Pathway
ming03013
Nucleocytoplasmic transport
ming03015
mRNA surveillance pathway
ming03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ming00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122064390
09122 Translation
03013 Nucleocytoplasmic transport
122064390
03015 mRNA surveillance pathway
122064390
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ming03019
]
122064390
03041 Spliceosome [BR:
ming03041
]
122064390
Enzymes [BR:
ming01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
122064390
Messenger RNA biogenesis [BR:
ming03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
122064390
Spliceosome [BR:
ming03041
]
Complex C
Other components
EJC/TREX
122064390
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
122064390
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
Motif
Other DBs
NCBI-GeneID:
122064390
NCBI-ProteinID:
XP_042484042
LinkDB
All DBs
Position
Unknown
AA seq
430 aa
AA seq
DB search
MGETKDNVETYEEEELIDYEEEDVKAPDSVGAKGTGDAVKKGYVGIHSSGFRDFLLKPEL
LRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPVAGQVAA
LVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNVRTHKDLLKNECPHIVVGTPGRI
LGLARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIR
PVCKRFMQDPMEIYVDDEAKLTLHGLVQHYIKLTDLEKNRKLNDLLDALDFNQVVIFVKS
VSRASELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGHKRILVATDLVGRGIDIERV
NIVINYDMPDNADTYLHRVGRAGRFGTKGLAITFVSSASDSDVLNQVQERFEVDIKELPE
QIDTTTYMPS
NT seq
1293 nt
NT seq
+upstream
nt +downstream
nt
atgggagagacgaaagacaacgttgagacttacgaggaagaagagcttattgattacgaa
gaggaagacgtgaaggcacctgattctgtcggagctaaaggcaccggtgatgcagtcaag
aaaggctacgttgggattcacagttctggattcagagattttctattgaagcctgaactt
cttcgtgctatcgtggattcaggatttgagcatccttcagaagtgcaacacgagtgcatc
cctcaagcaatcctggggatggatgtcatctgtcaagcaaagtctgggatgggaaagact
gctgtcttcgttctctcaaccctgcaacaaattgagcctgttgctggtcaagttgctgcg
cttgttttatgccacacgagggaattggcttaccagatttgtcatgagtttgagcgtttc
agcacctacttgcctgacatcaaagttgctgtattctatggtggtgtaaacgtcaggact
cacaaggatttacttaagaatgaatgccctcatattgtcgttgggacacctgggaggata
ctgggtttagcaagagataaagatctctcattgaagaatgttaggcattttatccttgat
gaatgtgataaaatgcttgagtcactggacatgcggagggatgtgcaggagattttcaag
atgacccctcatgataagcaagttatgatgttttctgcgacactcagcaaggagatccgc
cctgtttgcaagagattcatgcaagatcccatggaaatttatgtggatgatgaagccaag
ttgaccttgcatggccttgtgcagcactacattaaactgactgacttagaaaaaaaccgc
aagttgaatgatcttctagatgcattggatttcaatcaagtggtcatatttgttaaaagt
gtgagtagagcatcggagctgaacaagttactcgtggagtgtaattttccatccatttgc
atccattctggaatgtctcaggaagaaaggttgacacggtacaagggttttaaggagggg
cataaaaggattcttgtggcaacagatttagttggcaggggaatcgatattgagcgtgtc
aacattgtaatcaactatgacatgcctgataatgctgacacgtacttacacagggttggc
agggctggtcgttttggtaccaaaggacttgcaatcacgtttgtctcatctgcttctgat
tctgatgttcttaatcaggttcaggagagatttgaggtggacataaaggagcttcctgag
caaattgataccaccacatacatgccatcatga
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