Macadamia integrifolia (macadamia nut): 122067085
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Entry
122067085 CDS
T07436
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH2 isoform X1
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
ming
Macadamia integrifolia (macadamia nut)
Pathway
ming03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ming00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122067085
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ming03041
]
122067085
03009 Ribosome biogenesis [BR:
ming03009
]
122067085
Enzymes [BR:
ming01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
122067085
Spliceosome [BR:
ming03041
]
Complex A
U2 snRNP components
U2 related factors
122067085
Complex B
122067085
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
122067085
Ribosome biogenesis [BR:
ming03009
]
Eukaryotic type
90S particles
Helicases
122067085
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
HA2_N
DEAD
Helicase_C
AAA_22
AAA_19
ResIII
SRP54
nSTAND3
FtsK_SpoIIIE
ABC_tran
AAA_7
T2SSE
Flavi_DEAD
AAA_33
AAA_30
PhoH
Motif
Other DBs
NCBI-GeneID:
122067085
NCBI-ProteinID:
XP_042486870
LinkDB
All DBs
Position
2:complement(10354207..10359485)
Genome browser
AA seq
723 aa
AA seq
DB search
MSTERKRKVSLFDVVDETSVSAKKASVNGGSFLNPAINKWNGRPYSQRYYEILEKRKTLP
VWQQKEEFFQALKANQSLILVGETGSGKTTQIPQFVLDAVELETPDKRKKMMIACTQPRR
VAAMSVSRRVAEEMDVTIGEEVGYSIRFEDCSSSKTVLKYLTDGMLLREAMTDPLLERYR
VIILDEAHERTLATDVLFGLLKEVLKNRPDMKLVVMSATLEAEKFQGYFYGAPLMKVPGR
LHPVEIFYTQEPERDYLEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEIGNM
GDQVGPVKVVPLYSTLPPAMQQKIFEAAPPPLKEGDPPGRKIVVSTNIAETSLTIDGIVY
VIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQPGKCFRLYTEKSFHNDLQ
PQTYPEILRSNLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLGALDDEGNL
TKLGEIMSEFPLDPQMSKMLVVSAEFDCSNEILSISAMLSVPNCFVRPREAQKAADEAKA
RFGHIDGDHLTLLNVYHAYKQNNEDPQWCYENFINHRTLKAADNVRQQLVRIMARFNLKL
CSTDFNSRDYYINIRKAMLAGYFMQVAHLERTGHYLTVKDNQVVHLHPSNCLDHKPEWVI
YNEYVLTSRNFIRTVTDVRGEWLVDISPHYYDLDNFPQCEAKRVLERLYKKREREKEENK
NKK
NT seq
2172 nt
NT seq
+upstream
nt +downstream
nt
atgtctacggagaggaaaaggaaggtgagcttgtttgatgtggtggacgaaacttctgtc
tccgcgaagaaagctagtgttaatggtggctctttcctcaatcctgccattaataaatgg
aatggccgaccttattcacagaggtactatgaaatcctggaaaagaggaagacgcttccg
gtatggcaacaaaaagaagaatttttccaggctctgaaggctaaccagtcgttgatattg
gttggagaaactggtagcggaaaaacaactcagatccctcagtttgttttggatgcggtt
gaattagagacacctgacaaacgaaaaaagatgatgatagcctgcacacagcctcgtagg
gttgctgcgatgtctgtgtcccgtcgagttgcggaagagatggatgtaacaattggagaa
gaagtcggttacagcatccggtttgaagattgcagtagttcaaaaactgttctaaagtat
ttaacagatggtatgcttttgagagaagctatgacagatccccttctggaacgttataga
gttattatacttgatgaggctcatgaaagaaccttagcaacagatgttctatttgggctt
ctgaaagaagtactgaaaaataggcctgatatgaaactggtggtgatgagtgcaaccctc
gaggccgagaagtttcagggttacttttatggtgcacctcttatgaaagttcctggaagg
ctccatccagtagagatattctacacacaggaacctgagagggattaccttgaagcagca
attcgaacggttgtgcagatacacatgtgcgagccttctggtgacatccttgttttcctt
actggtgaggaagagattgaagatgcatgcaggaaaataacaaaagaaattggaaatatg
ggtgaccaggtgggcccagtgaaagtagttcctctgtattcaacacttcctccagctatg
cagcagaagatttttgaggctgccccacctccactgaaggaaggtgatcctcctggaagg
aagattgtagtgtcaaccaacattgcagaaacttctttgactattgatggcattgtttac
gttatagaccctgggttcgccaagcagaaggtttataatccacgagttcgggtggaatct
ttactggtctctccaatatcaaaggcaagtgcacaccagagatcaggtcgtgctggaaga
acacaacctggaaaatgcttcagactctacactgaaaaaagtttccacaatgatctccag
ccacagacttaccctgagatactgcgatcaaatctggcaaacacggttctgaccttaaag
aagcttggaattgatgatctagtgcattttgattttatggaccctcctgccccggagaca
ttgatgcgggcactggaggtcttgaactacttgggtgcactggatgatgaaggaaatttg
accaagctgggggaaataatgagtgaatttcctttggatcctcaaatgtcaaagatgctt
gttgtcagtgctgaatttgactgttcaaacgaaatcctttctatttcagccatgctctca
gtacccaattgctttgtccggcctagggaggctcaaaaagctgcagacgaagcgaaagct
cgatttggacacatcgatggggatcacctcacacttctgaatgtctatcatgcatacaag
caaaacaatgaagatcctcagtggtgttacgaaaactttatcaatcataggaccctgaag
gctgctgataatgtcaggcaacagttggttcgcattatggcaaggttcaacctgaagtta
tgcagcacagatttcaacagccgagactactacataaacataaggaaagctatgctggcc
ggttattttatgcaggttgctcaccttgagcgtactggtcactatttgacagtgaaagac
aatcaggtggttcaccttcatccttctaactgcctggatcacaagccggagtgggtcatc
tacaacgagtatgtattgacgagtcggaatttcattcgtacagttactgatgttcgaggt
gaatggctggtggacatatcacctcactactatgacctagacaacttccctcaatgtgag
gccaagcgtgttcttgagaggctttacaagaagcgggaaagggaaaaggaagagaataag
aacaagaagtga
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