Macadamia integrifolia (macadamia nut): 122068297
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Entry
122068297 CDS
T07436
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH3
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
ming
Macadamia integrifolia (macadamia nut)
Pathway
ming03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ming00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
122068297
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ming03019
]
122068297
03012 Translation factors [BR:
ming03012
]
122068297
Enzymes [BR:
ming01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
122068297
Messenger RNA biogenesis [BR:
ming03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
122068297
Translation factors [BR:
ming03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
122068297
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
HA2_N
dsrm
AAA_22
nSTAND3
ATPase
AAA_19
T2SSE
AAA_16
ABC_tran
PhoH
AAA_23
Motif
Other DBs
NCBI-GeneID:
122068297
NCBI-ProteinID:
XP_042488107
LinkDB
All DBs
Position
Unknown
AA seq
1161 aa
AA seq
DB search
MHSGLSLLIGFGKLVSSLSSRRFTRKDEALFSLLRASISSGGGCKIGNGIWSKYLVTGRR
SFSGYAVEQFSDDEYECDFDNQKMSSSVANIDEWKWKLSLLLRSEKDQEIISRDKRDRRD
YEQISNLARRMGLYSEIYGKVVVASKDPLPNYRPDLDDKRPQREVVIPLSLQRRVEGLFQ
EHVDRLQLNSGKVSDNLVDAKVIDRIEDVNQDDNPDDFLDGSLMEKVLQRRSWRMRNMQR
AWQESPEGKKMLDFRKSLPSYKEKERLLSAIARNQVVVISGETGCGKTTQLPQYILESEI
ESGRGAFCSIICTQPRRISAMAVSERVSTERGEPLGESVGYKVRLEGMKGKNTHLLFCTS
GILLRRLLSDRNLNGITHVFVDEIHERGMNEDFLLIVLKDLLPRRRDLRLILMSATLNAE
LFSKFFGGAPTIHIPGFTHPVRAHFLEDVLEMSGYKMTSFNQIDDYGQEKLWKTQRQLLP
RKKKNQITALVEDALNKSSFENYSSKVRDSLSSWSPDSIGFNLIEAVLCHICRKERAGGV
LVFMTGWEDISCLRDQLKAHPLLGDPNRILLLTCHGSMATSEQKLIFEKPPPNIRKIVLA
TNMAEASITVNDIVFVVDCGKAKETTYDALNNTPCLLPSWISKASARQRRGRAGRVQPGE
CYHLYPRCVYEAFAEYQLPELLRTPLNSLCLQIKSLQLGTIGNFLAAALQPPEPLAVQNA
VDFLKMIGALDEKENLTNLGEFLAMLPVDPKLGKMLIMGAIFRCFDPILTIVAGLSVRDP
FLLPQDKKDLAGTAKSRFSAKDYSDHMALVRAYEGWKDAEREGSAYEYCWRNFLSAQTLK
AIHSLRKQFNFILKESGLLDADASSNNSLSHNQSLVRAIICSGLFPGIASVVHRETSMSF
KTMDDGQVLLYANSVNARYQTIPYPWLVFGEKVKVNAIFIRDSTGVSDSALILFGGSLSP
GVSAGHLKMLEGYIDFFMDPSLADCYWNLKEELDKLLHRKLQDPSLDIHKEGKYLMLAVQ
ELVASDQCEGRFVFGRESKKARVVSDDGNSSNNFTKDGTNPKSLLQTLLTRAGHTPPKYK
AKHLKTNEFRALVEFKGMQFVGKPKRNKQLAERDAAIEALAWLTHTSDNSRDEDDNSPLD
ITDNMLKLLGKRRTSKRHSGR
NT seq
3486 nt
NT seq
+upstream
nt +downstream
nt
atgcactccggattaagcttgcttattggatttggcaagttggtgtcgtctctttctagt
cgcaggttcacgaggaaagatgaggctctgttttcattactgcgagcttcgatttcaagc
ggcggaggctgcaaaattgggaacggaatttggtcgaaatacttggttacaggacggcgc
agtttcagtggatacgcggtggagcaattttcagacgatgaatacgagtgtgatttcgat
aatcagaagatgtcttcctccgtggccaacattgatgaatggaaatggaaactcagcctg
ctattacgcagtgaaaaagaccaagaaataatttctagagacaagagagataggagagac
tatgagcagatttctaaccttgcaagaaggatgggcctttacagtgaaatttatggaaaa
gtggtggttgcaagcaaggatcctcttccaaattaccgaccagatcttgatgacaaacga
cctcagagagaggtggttatacctctcagcttgcaaaggagagttgagggtctatttcag
gagcacgttgatagattgcagttaaactctggaaaggtcagtgacaatttagttgatgct
aaggtcattgatcggattgaagatgtgaatcaggatgacaacccagatgatttccttgat
gggtcactgatggaaaaggttcttcagagaaggagttggcgaatgcgaaatatgcagaga
gcttggcaggaatctcctgagggaaagaagatgctggactttaggaaatctcttccttcg
tacaaggagaaggaaagactgctttctgcaattgcacgaaatcaggttgtagtgatttca
ggggagactggctgtggaaaaaccacgcaacttcctcaatacatattggaatcagaaata
gaatctggtcgtggggcattctgtagtatcatttgtactcaacctcgaagaatatctgca
atggctgtttccgagagagtttcaacagaaagaggagagcctcttggtgaatcagttggt
tacaaagttcggttagagggaatgaaaggcaaaaatacacatctactgttttgtaccagt
ggtattttgctaaggaggttgctttctgaccgcaatctgaatggaataacgcatgttttc
gttgatgaaattcatgaaagaggcatgaacgaagacttcctattgatcgttttgaaggat
cttcttccacgccgtcgagatttgagattgattttaatgagtgcaactctgaatgcggag
ctgttttcaaaattttttggtggggcaccaactattcacattccgggcttcactcaccca
gtacgtgcacactttctggaagatgtattggagatgtcaggttataagatgacctcgttc
aatcaaattgatgattatggccaagagaagttgtggaaaacacagaggcagctattgcca
cgaaaaaagaaaaaccagatcactgcacttgttgaggatgcacttaataagtcaagcttt
gagaattatagttccaaagtacgggattctctgtcatcttggtctcctgattccatagga
tttaatcttattgaggcggttttatgccatatatgccgcaaggagcgagctggtggcgtg
ttagtatttatgactggctgggaggatattagttgtttgcgagatcaacttaaagctcat
cccctcttaggagatccaaataggatactactgcttacatgccatggttcaatggccaca
tctgaacagaaactcatatttgagaaaccacctccaaatatacgtaagatagttcttgct
acaaacatggcggaggcaagcataaccgtcaatgatatagtttttgtggttgattgtgga
aaagcgaaagaaacaacatatgatgctttgaacaatacaccttgtttattaccttcgtgg
atatcaaaagcatctgcccgacaaagaagaggtagagctggacgtgtgcagccaggagag
tgctatcatctgtatcccagatgtgtatacgaagcttttgctgaatatcaacttcctgaa
cttttgagaactcctttgaattctctctgtttgcaaataaaaagtttgcagcttggaaca
atagggaattttttagcagctgctctgcagccaccagaaccactggctgtccagaatgca
gttgactttttaaagatgattggagctttagatgagaaggagaatctgacaaaccttgga
gagtttctagcaatgcttccagtagatccaaagcttggaaagatgcttatcatgggtgcc
atctttcgttgttttgatcctattcttacgatagtggctggacttagtgtcagggatccc
tttttgttgcctcaagacaagaaggatttagcagggacagcaaagtcaagattctctgcg
aaagactacagtgatcatatggctcttgtccgtgcttatgaaggatggaaagatgcagaa
agagaagggtcggcttatgaatattgctggcggaatttcctctctgctcagactcttaag
gctatccattctctcaggaagcaatttaacttcattttaaaggaatctggtttattagat
gcagatgccagcagcaataatagtttaagccacaatcagtcgctggttcgtgctattatc
tgttctggcctctttcctggcatagcatctgttgtgcacagggagacttctatgtctttc
aaaactatggatgatggccaggttctactatatgcaaactccgtgaacgcacgatatcag
acaatcccatacccttggttggtatttggagagaaagtcaaggtcaatgccattttcata
cgtgattccactggtgtatctgattcagcactaatcctttttggcggttctcttagccct
ggggtttcggctggacatctgaaaatgttggaaggttatattgatttcttcatggatcct
agtttggcagattgctattggaacctcaaggaggaattggacaagcttctccacaggaag
cttcaagatccaagccttgacatccacaaggaaggcaagtacctcatgcttgctgtgcaa
gagctggttgcatcagatcaatgtgaaggtaggtttgtattcggccgtgaaagcaaaaaa
gctagggttgttagtgatgatggaaatagcagcaacaactttaccaaggatggaacaaat
cctaagagcttgcttcaaacactgctgacgagagctggtcacacccctcccaagtacaaa
gcaaaacacctaaagaccaatgaattcagggccctggtggaattcaaagggatgcaattt
gttgggaagcccaagagaaacaagcagcttgcagagagagatgctgcgatagaggcattg
gcatggttgacacacacctcggacaacagcagggatgaagatgacaattcccctcttgac
atcaccgacaacatgcttaaactgttggggaaacgcaggacatccaaacgtcactctggt
cgatga
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integrated database retrieval system
