Macadamia integrifolia (macadamia nut): 122069206
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Entry
122069206 CDS
T07436
Name
(RefSeq) polyadenylation and cleavage factor homolog 4-like isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
ming
Macadamia integrifolia (macadamia nut)
Pathway
ming03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ming00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
122069206
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ming03021
]
122069206
03019 Messenger RNA biogenesis [BR:
ming03019
]
122069206
Transcription machinery [BR:
ming03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
122069206
Messenger RNA biogenesis [BR:
ming03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
122069206
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf_PCFS4
CID
Pcf11_C
zf_UBZ
Motif
Other DBs
NCBI-GeneID:
122069206
NCBI-ProteinID:
XP_042489100
LinkDB
All DBs
Position
Unknown
AA seq
1115 aa
AA seq
DB search
MTYGSYRPLINQAMEEERFVSSRGNPRDLGFLSERGTGTSSNNINSKGMPNDIIQKPLPS
ILDRFRALLKEREELRVSDEDDVPAPSSEEIVRLYEVVLSELILNSKPLITELTIIAGDQ
RQYGGGIAAAISARILEAPVEQKLPSLYLLDSIVKNIGREYARYFASHLPEVFCEAYRQV
HPNQHPAMRHLFGTWSAVFPPSVLRKIEAELKFSSSVNHPSSGLAVMKSSESPFARPTHG
IHVNPKYLEARHQFEHSTVMHETDRSHNAVHMTTFGGERLERSTSTRPTGWPGDSPKFHD
VQRARGVSSSLQIYGQKSATGSSEYDIDNPDVLGAPKLGSPRGTARKSSVSGVERPHPLK
TRLTRPSSPSRIGLPRSLSPPADGFRTDNSPGRFVERDSPFRSGFDSRLGRAIDGDGDGD
GERTDWWKCWSNDNHQHLENSSANLSNGYDRERPRALIDAYGNGRGKNRQTEKPMKVDLL
DVNGIKSETGTRWQNTDEEEFVWEDMSPTLADRSRSNDPMPSHPPLDRFNGRTSLGRSGA
ASLEHDFRKGNWQLAMDDTTEDGVSILGFGHGSMIKNSLSDPGTQNESTHIPSSRYPHHY
PQSSQQNLDPNTGARTGQMSYPAGGMAISAGQKHSLQIENFPDSDGQCQRFSSVRSRIGS
SSPNSSMVEPVSPMMPMLTLEKYLGPGPHAPPLAQLPWPAVNLPRSHPLTLPPIISQQKQ
IRSPFYTMDVNKPVLNQVPSKSSVLPGQRLDASERKAQSSGKLMPLPNQQTGLISLNQRN
HGQAALLQRQLIQSQDARESYIPFAAPQISSHLMARSLNQGHIPQGHGPIVNSILSNPTP
GVPPSSVTLSSIPNNSFHLQGGTLPPLPPGPPPASSQMGTISQNSGPISTQPPAGSAFSG
LISSLVAQGLISLTTSASIEDSVGIDFNPDLLKVRYESAVKALYADLPRQCTACGLRFKC
QEEHSSHMDWHVTRNRISKNRKQKPSRKWFVSTSVWLSGAEAVGTDAVPGFLPTEAVAEK
RDDEEMAVPADENQNVCALCGEPFDDFYSDETEEWMYKGAVYLNAPGGLTAGMDISQLGP
IVHAKCRSESTVAAPEDFVLDGGGDEGNQRKKMRS
NT seq
3348 nt
NT seq
+upstream
nt +downstream
nt
atgacatacggaagctatagacccttgattaatcaagcgatggaagaagaaaggttcgtc
tcctccagagggaaccctagagatttagggtttctatcagaacgtgggacgggcaccagc
agcaataacatcaacagcaagggcatgcccaatgacatcatccagaagcctcttccctca
attcttgatcggtttagggctcttttgaaggagagggaggagttgagggtatctgacgag
gacgatgttccggcacccagcagtgaagagattgttcgactttacgaagtcgttttatca
gagcttatactcaattccaagcctcttataaccgagctgacgataatcgctggagatcag
aggcagtacggcgggggaattgctgctgcaatttctgcccggattctcgaggcgcctgtc
gagcaaaagttgccttctttatatcttcttgatagtattgttaagaacattggccgtgaa
tatgcgaggtactttgcttcccatctccctgaggtcttctgtgaggcatacaggcaagtt
caccctaaccagcatccagccatgcgtcacctctttggcacctggtcagcagtgttccca
ccttcagtgcttcgcaaaattgaggcagaactaaagttttcttcttctgtaaaccatccg
tcatctggcttggcagttatgaagtcatctgagtctccatttgctcgaccaactcatgga
atacatgtgaatcccaagtatttggaggcgagacatcaatttgaacattcaactgtgatg
catgaaactgatcgcagtcataatgctgtacatatgaccacctttggaggtgaaagactg
gagagaagtacatcaacaagaccaacaggatggcctggagattctccgaaattccatgat
gttcaacgtgcaaggggggtttcatccagtttacagatatatggtcagaaatctgccact
gggtctagtgaatatgacattgataatcctgatgtcctgggagccccaaagttagggtca
cctcggggtacagcccgtaaatcatctgtcagtggagtagaaagaccacaccctttaaaa
actagacttacaaggccctcttctccttcaagaatagggctccctaggtctttatcacca
ccagctgatgggttcagaactgataattctccaggaaggtttgttgaaagggactctcca
tttcgttctggatttgattccaggcttggcagagcaattgatggtgatggtgatggggat
ggtgagaggactgactggtggaaatgttggtccaatgacaaccatcagcacttagaaaat
tctagtgcaaacctcagtaatggatatgatcgggaaaggcccagagctctgattgatgct
tatggaaatggaagaggtaaaaacagacagacagagaagcctatgaaggttgacctgctt
gatgtgaatggcattaaaagtgagacaggtacaagatggcagaatacagatgaagaagag
tttgtttgggaagatatgagcccaactttagcagatcgtagtaggagtaatgatccgatg
ccatcacatcctcctcttgatcgcttcaacggaagaactagtttgggaagatcaggtgct
gcaagtttggaacatgatttcagaaagggtaattggcagctagcaatggatgacaccact
gaagacggggtttccatccttggttttggacatggatctatgattaagaattctctgagt
gatccaggaactcaaaacgaatccactcacattccaagttctcggtatccgcatcactac
cctcagtcctcccaacaaaacctggaccccaacacaggagcaagaactggtcagatgtcc
tatccagctggtggaatggctatatcagctggtcagaaacactctcttcaaattgaaaat
tttccagatagtgatggacaatgtcaaagattctctagtgtaagatcgaggattggttct
tcaagcccaaattcttcaatggttgagcctgtgtcacctatgatgccaatgttgacgctg
gaaaagtatctgggaccagggcctcacgcacctcccttggctcaacttccttggcctgca
gttaatttgcctagatctcatccacttactttgccccccattatttctcaacagaagcaa
attagaagtccattttacacaatggatgttaacaagccagtcttgaatcaggttccaagt
aaatcttctgtgttgcctggacagcggttggacgcttctgaaaggaaagctcagagttca
ggtaagctgatgccattgcctaatcaacagactgggttgatttcattgaatcagagaaac
cacggacaagctgcacttctacagagacaattaattcagtctcaggatgcacgagaaagt
tacattccatttgctgctcctcagatctcgtctcatttaatggcacgatccttgaatcag
gggcacattcctcaagggcatggacctattgtgaattcaattttgtccaatccaacacct
ggggttcctccctcctctgtaactctatctagtatacccaacaactccttccacttgcag
ggtggaaccttacctcctttacctcctggcccccctcctgcctcatcacaaatgggaacc
atttcacaaaattcgggccccatttcaacacagccgccggctggaagtgcattttctggt
ctcataagttctcttgtggctcaggggttgatttcactgacaacatcagcttcaatagag
gattctgttgggattgacttcaacccagatcttctcaaggtccggtatgaatctgcagtg
aaggctttatatgctgatcttccaagacagtgcacagcatgtggtttacgtttcaaatgc
caggaggagcacagtagtcacatggattggcatgtgaccaggaatcggatatcaaaaaac
cgtaagcagaaaccctctcgcaagtggtttgtgagtactagtgtgtggctcagtggtgca
gaggcagttggaactgatgcagttcctgggtttttgcccactgaagctgttgcagaaaaa
agagatgatgaagaaatggctgttcctgccgatgagaatcagaatgtgtgtgcattatgt
ggagagccttttgatgatttttatagtgacgagactgaggaatggatgtataaaggagct
gtttatttgaatgcacctggtgggttaacagcaggtatggatatatctcagctgggtcct
attgttcatgcgaagtgcagatcagagtctacagtagctgcccctgaagattttgtacta
gatggcgggggtgacgagggtaatcaaaggaaaaagatgcggagttag
DBGET
integrated database retrieval system
