Macadamia integrifolia (macadamia nut): 122071237
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Entry
122071237 CDS
T07436
Name
(RefSeq) regulator of nonsense transcripts 1 homolog isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
ming
Macadamia integrifolia (macadamia nut)
Pathway
ming03013
Nucleocytoplasmic transport
ming03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ming00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
122071237
03015 mRNA surveillance pathway
122071237
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ming03019
]
122071237
Enzymes [BR:
ming01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
122071237
5.6.2.5 RNA 5'-3' helicase
122071237
Messenger RNA biogenesis [BR:
ming03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
122071237
mRNA cycle factors
Common to processing body (P body) and stress granule
122071237
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
DEAD
Helicase_RecD
NPHP3_N
nSTAND3
UvrD-helicase
ATPase
PhoH
SRP54
AAA_16
AAA_22
AAA_25
Ribosomal_S13_N
AAA_32
AAA
Motif
Other DBs
NCBI-GeneID:
122071237
NCBI-ProteinID:
XP_042491491
LinkDB
All DBs
Position
Unknown
AA seq
1280 aa
AA seq
DB search
MAAQTVVNNLYETASQPDTGGDAYTFLEFNTQGDDYDYPEFRELSQPIRSSVWPSASDSV
SDPSERGADLQAETGGTVSAASGSASKVRGGGGGGSSSGGSNNQAAVDALAAGMSGLNFE
ETGDDENYDFGKGNFTEHACRYCGVQNPACVVRCNVPSCRKWFCNSRGNTSGSHIVNHLV
RAKHKEVCLHKDSPLGETILECYNCGCRNVFLLGFISAKTESVVVLLCREPCLSVNALKD
MNWDLSQWCPLIDDRCFLQWLVKIPSEQEQLRARQISAQQINKVEELWKTNPDASLEDLE
KPGVDDEPQPVALKYEDAYQYQNVFAPLIKLEADYDKMMKESQSKDNVTIRWDIGLNKKR
IAYFVFPKEDNELRLVPGDELRLRYPGDATHPAWQSVGHVIKLTAQEEVALELRASQGVP
VDVNHSFSVDFVWKSTSFDRMQGAMKTFAVDETSVSGYIYHHLLGHEVEAQVVRNTLPRR
FGAPGLPELNASQVFAVKSVLQKPVSLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAP
SNVAVDQLAEKISATGLKVVRLCAKSREAVSSPVEHLTLHYQVRHLDTSEKSELHKLQQL
KDEQGELSSSDEKKYKALKRATEREISQSADVICCTCVGAGDPRLANFRFRQVLIDESTQ
STEPECLIPLVLGVKQVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVLLGVKPFRLQV
QYRMHPALSEFPSNSFYEGTLQNGVTINERQSSGIDFPWPVPNRPMFFYVQMGQEEISAS
GTSYLNRTESANVEKIVTTFLRSGVIPSQIGVITPYEGQRAYIVNYMSRNGALRQQLYKE
IEVASVDSFQGREKDYIILSCVRSNEHQGIGFLNDPRRLNVALTRARYGIVILGNPKVLS
KQPLWNGLLTHYKEHECLVEGPLSNLKQSMVQFQKPKKIYNDRRLFFGGGPGIVPNDNFG
SVGSSNPNADRRGSRSKGSYMSFGPPNGTHKPGLHPTGFPVPRIPLSPFPGGPHSQPYAI
PTRGAVHGPIGAVPQVPQPGSRGFGAGRGNAGGPIGGHLSHQQGSQQSIGNIGSTFNFPA
LDNPNSQPSAGGTLSQTGLMTQMPVQGLSQTFRDGFSIGGMSQDFLGDDFKSQGSHVAYN
VADFSTQASQSGYGVDYVTQGAQARFPGSFLNQNSQAGYSHLGTGNDLISQDYMSHGSQG
LFTQVGFNDPTQEDASQSHFGVAGLNPLQSQGLMNPLYSQPFTQYNTQPLNLPGPQQQQQ
QPQQQQGSQSSQNQKLHYNG
NT seq
3843 nt
NT seq
+upstream
nt +downstream
nt
atggccgctcagacggttgtaaacaatctctacgagacggcttcacaacctgacacgggc
ggcgacgcttacacctttctcgagttcaacacccagggcgatgattacgattatcctgaa
tttcgagaactttcacagccgatcaggtcttcggtttggccttctgcgtctgattccgtc
tctgacccttctgaacgtggtgccgatctccaagccgagactggtggcactgtctctgct
gcttctggtagtgcttccaaggttagaggtggtggtggtggtggtagcagcagtggtgga
agcaataaccaggctgcggtggatgccctagcggcgggaatgagtggtctgaactttgag
gaaacaggtgatgatgagaattatgactttggaaagggtaatttcacggagcatgcttgt
cgatactgtggggttcagaacccggcttgtgttgtgcgttgcaatgtgccttcttgtcgt
aagtggttttgtaactcgcggggcaacacttcggggtctcatatcgtcaatcacctggtt
cgagcaaagcacaaggaagtctgccttcataaagacagtcctcttggagaaacaatcctc
gagtgctataactgtggatgccgaaatgttttccttcttggatttatttcagccaagaca
gagagtgtcgttgttcttctctgcagggaaccttgtttgagtgtcaatgcattgaaggac
atgaactgggacttgagtcagtggtgtcctcttatcgatgatcgttgtttcttgcagtgg
cttgttaagattccatctgaacaagaacagttgagggcacgccaaattagtgctcaacag
ataaataaggtggaggaactttggaaaacaaaccctgatgcctctcttgaagatcttgag
aagcctggagtggatgatgaacctcagcctgtagccttaaagtatgaagatgcttatcag
tatcaaaatgtgtttgcaccactcattaagctggaagccgattatgataaaatgatgaaa
gaatcacaaagcaaagacaatgtcacaatacgatgggatatcgggcttaacaagaaacgc
attgcatactttgtttttccaaaggaagataatgagttaaggcttgtacctggtgatgag
ttgcgacttcgttatccgggggatgcaactcatccagcatggcagtcagtggggcatgtg
atcaagttaactgcacaagaggaagttgctcttgagcttcgtgccagtcagggtgtacct
gttgatgtgaaccacagtttcagtgttgattttgtttggaagagtaccagctttgatcga
atgcagggagctatgaagacatttgcagtggatgaaacaagtgtcagtggatacatctac
caccacttgttgggacatgaagttgaggctcaggtggttcgtaacacactacctcgtcgt
tttggtgctccaggacttccggaacttaatgcatctcaagtttttgctgtaaagagtgtt
cttcagaagccagtaagtttaatacaaggcccccctggtacagggaaaacagttacttct
gctgccattgtttatcatatggcaaaacaaggccaaggccaggtcttggtttgtgctcca
agtaatgtggctgttgaccaacttgctgagaagataagtgcaactgggttaaaggtcgtc
aggctttgtgctaaatcaagggaagctgtaagctctcctgttgagcatttgacgctgcac
tatcaggttcggcatcttgatacttctgaaaaaagtgaacttcataaattgcagcaactg
aaagatgaacaaggagaattgtctagcagtgatgagaagaagtacaaagccttgaaacgg
gcaactgaaagggagatatctcagagtgctgatgtcatctgttgcacttgtgttggtgct
ggagatcctcgtttggcaaattttagattccgtcaggttcttattgatgaatccacccaa
tctacagaacctgagtgtcttattcctctggtgcttggtgtaaaacaggtggttcttgtt
ggggaccattgccagcttggtccggtcattatgtgcaagaaagcagctcgtgctggatta
gcacagtctctgtttgagcgcctggtgctccttggtgtgaagccattcagactgcaggtt
caatatcgtatgcatccagccctgtcagagttcccttccaacagcttctatgaaggaacc
cttcaaaatggggttacgataaatgaaagacaatcatcgggaattgacttcccttggcct
gtgccgaatcgtcccatgttcttttatgttcagatgggacaagaggagatcagtgctagt
ggaacttcttacttaaatagaactgagtctgcaaatgttgaaaaaattgtaaccaccttt
ttaaggagtggtgtcatccctagtcagattggcgttataacaccatatgaagggcagcga
gcatacattgtgaactacatgtcaagaaatggtgctcttaggcagcaactttacaaggaa
attgaggttgcaagtgtggattccttccagggaagggagaaagactacatcattttgtct
tgtgtaaggagtaacgagcatcagggcattgggttccttaatgatccacgcaggctgaat
gtggcgcttacacgagcccgttatggcattgttatcttggggaatcctaaagtcttaagc
aaacagccattgtggaatggtttactgacacactataaggaacatgaatgcttggtggaa
ggacctttgagtaacttgaagcagagtatggttcagtttcaaaagccaaagaagatctac
aatgaccgaaggcttttcttcggcggtggcccagggattgttcctaatgacaattttggg
tcggttggttcatcaaacccaaatgctgatagaagaggtagtcgctctaaaggttcttat
atgtctttcggtcctcccaatggaacacataaacctggactgcatcccacagggtttcct
gtgcctagaattccactttcaccatttcctggtggtccccattctcagccatatgcaatt
ccaactcgtggggctgttcatggaccaattggagctgttcctcaggtccctcaacctgga
agcaggggttttggtgctggtcgtggtaatgcaggtggtcctataggcggtcatctctca
catcagcaaggttctcagcaaagcatagggaatattgggtctactttcaactttcctgct
ctggacaatccaaacagtcagccatctgcgggtggtactttatcacaaactgggctcatg
actcagatgccggttcaggggctgagtcagactttccgtgatggattttccattgggggc
atgtctcaggatttcttgggcgatgatttcaagagccagggatcccatgttgcatataat
gttgcagacttctctacacaggcttctcagagcggctatggtgttgattatgtcacacaa
ggagcacaagcgaggttcccaggaagtttcctgaaccagaattcccaggctggatattct
catttgggcacagggaatgatttaatatctcaggactatatgtctcatggatcacaaggc
ttattcacacaggttgggtttaatgatccaacccaagaagatgcctcccagagtcacttt
ggagtggcaggtctcaatccactccaatcacagggcttgatgaatcctctttattcccaa
cccttcacccagtacaacactcagccactaaacctgccaggtccacagcagcagcagcaa
cagccacagcagcagcagggcagccagagctcacaaaaccagaaactccactacaatggc
tga
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