Macadamia integrifolia (macadamia nut): 122076205
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Entry
122076205 CDS
T07436
Name
(RefSeq) endoribonuclease Dicer homolog 1
KO
K11592
endoribonuclease Dicer [EC:3.1.26.-]
Organism
ming
Macadamia integrifolia (macadamia nut)
Brite
KEGG Orthology (KO) [BR:
ming00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
ming03036
]
122076205
Chromosome and associated proteins [BR:
ming03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
122076205
microRNA pathway
RISC loading complex
122076205
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ribonuclease_3
Ribonucleas_3_3
Dicer_dimer
dsrm
PAZ
DND1_DSRM
Helicase_C
DEAD
ResIII
Dicer_dsRBD
Dicer_PBD
SNF2-rel_dom
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
122076205
NCBI-ProteinID:
XP_042497460
LinkDB
All DBs
Position
4:19976555..20005941
Genome browser
AA seq
1992 aa
AA seq
DB search
MEENRASESIGDGVTLPPNNARASGSIGDGVTHSPDDARASYWLDACEDISCDLITDLVD
FDSVAPDIVDTASCQAVDACFFGGIDRILDSIKSGCGLQPLVENETVVGSSIDGHSACEA
GPQGATSYGELNRTIVRDTLPGGARPLGWDSTDGKKISSNGSANGNGVLVTSPKDIGGVR
KREGRDTDVRREGSLRGDADRCIKRPRPSDSSDERVFSVSRHDLSRVLRSSRKRPRCREE
IERRDTVRSSKRERYCGDRRDNRERDSRERDWRDRERRGYWERDRTGKMVFHSGSWETEN
NRESKRAKEEIPQHIESSEKKPDEKEEKPAEEQARKYQLDVLEQAKNKNTIAFLETGAGK
TLIAVLLIKSVCNDMLRENKKMLAIFLVPKVPLVYQQAEVIRERTGYKVGHFCGEMGQDF
WDARRWQREFESKQVLVMTAQILLNILRHSIIKMEAIHLLILDECHHAVKKHPYSLVMSE
FYHTTPKEKRPAVFGMTASPVNLKGVSSQEDCAIKIRNLESKLDSVVCTIKDRKELEKYV
PTPSEIVVEYDKAATLCSLHEQIKQMEQAVEEAAHASSRRSKWQFMGARDAGAKEELRLV
YGVSERTESDGAANLIQKLRAINYALGELGQWCAYKVAHSFLMALQNDERANYQLDVKFQ
ESYLSKVVSLLQCHLSEGAVSHRDAKNIKTESDGALEGASIDEIEEGELPDSHVVSGGEH
VDVIIGAAVADGKVTPKVQSLIKILLKYQYTEDFRAIIFVERVVAALVLPKVFAELPSLS
FVKCASLIGHNNSQEMRTCQMQDTINKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLA
KTVLAYIQSRGRARKPGSDYILMVERGNLSHETFLRNARNSEERLRQEAIERTDLSHLKG
TSKLNSVDTAPGTVYQVESTGAVVSLNSSVGLIHFYCSQLPSDRYSILRPEFIMERHEKP
GGSTEYSCKLQLPCNAPFEKLEGPLCSSMRLAQQAVCLAACKKLHEMGAFTDMLLPDKGS
GEEGEKVNQNDEGDPLPGTARHREFYPEGVADILRGEWILTGTDGCHSSKLLPLYMYAVK
CVNDGTSNDSFLTQVSDFAVLFGNELDAEVLSMSMDLFVARTMITKASLVYQGPIEIMES
QLISLKSFHVRMMSIVLDVDVEPSSTPWDPAKAYLFVPVVGEKSVDLIKEIDWNLVENII
GVDEWNNPLQRARPDVYLGTSERTLGGDRREYGFGKLRHGMAFGQKSHPTYGIRGAIAQF
DVVKAFGLVPNRDSMGSPNEDVAHGKLIMADSYINAEELVGRIVTAAHSGKRFYVDSVRY
DMNAENSFPRKEGYLGPLEYSSYADYYRQKYGVELFHKKQPLIRGRGVSYCKNLLSPRFE
RSEACESEHEETLDKTYYVFLPPELCFVHPLPGSVVRGAQRLPSIMKRVESMLLAVQLKD
VINYPVPASKILEASTAASCQETFCYERAELLGDAYLKWVVSRFLFLKYPQKHEGQLTRM
RQQMVSNMVLYQYALSKGLQSYIQADRFAPSRWAAPGVLPVFDEDIKDTEAPLFGDERMP
AETESEKSFHFDSYENDDMEDGEVESDSSCYRVLSSKTLADVVEALIGVYYVEGGKNAAN
HLMKWIGIQVEFDPKEIESTSKPCSVPESVLRTINFDTLEGALNYKFIDKGLLVEAITHA
SRPSSGVSCYQRLEFVGDAVLDHLITKHLFFTYTDLPPGRLTDLRAAAVNNENFARVAVK
NKLHLHLRHGSSALEAQIRDFVKDVQDELTKPGFNSFGLGDCKAPKVLGDIVESIAGAIF
LDSGRDTAVVWRVFQPLLHPMVTPETLPMHPVRELQERCQQQAEGLEYKATRNGNLATVE
VYIDGVQIGIAQNPQKKMAQKLAARNALVVLKDRETAEAKEKAEEDEKKKNGTQTYTRQT
LNDICLRRQWPMPQYWCVNEGGPAHAKRFTYSVRVNTTDRGWTEDCVGEPMPSVKKAKDS
AAILLLELLNKW
NT seq
5979 nt
NT seq
+upstream
nt +downstream
nt
atggaggagaatagggcttctgaaagcattggtgacggagtgactcttccccccaacaac
gctagggcttccggaagcattggtgacggagtgactcattcccccgatgacgctagggct
tcttactggctcgatgcttgcgaggatatctcttgcgaccttattactgacttggtcgat
ttcgattcggttgctccagacattgtcgataccgcttcttgtcaggctgttgatgcttgt
ttctttggcgggattgatcgtatccttgatagtattaagagcggatgcggcctgcagcct
cttgtggagaatgagactgttgttggtagttctattgatggtcattccgcatgtgaagct
gggccccagggtgcgacatcatatggggagttgaatcggacgattgtacgagatactcta
ccgggcggagctcggccccttggctgggattctaccgacggaaagaagatctcgtccaat
ggttctgctaacggcaatggagtccttgttacgtctcctaaagacattggaggagtccgt
aagcgggagggtcgggatactgatgttagaagagaaggtagcttgcgtggtgacgcagac
agatgtatcaaaaggcctcgtcctagtgactccagtgatgagagggttttttctgttagc
cggcatgatctgtcgagggtactacgttcaagcaggaagaggccccgttgtcgggaagag
attgaaaggagggatacggttcgaagtagtaagagggaacgttactgtggcgacaggagg
gacaacagggagagggacagcagggagcgggactggagggacagagaaagaagaggttat
tgggagagagatcgaactggaaagatggtttttcattctggttcttgggagactgagaat
aatagagagtcaaagagagccaaggaagaaatcccgcaacacattgagagctccgagaag
aaacccgatgagaaggaggagaaaccagctgaggagcaggctaggaagtaccaattagat
gttctcgaacaggccaagaataaaaacacaatagcttttcttgaaactggtgcgggaaag
accctcatagccgttctccttatcaagagtgtttgcaatgatatgctcagagaaaataag
aaaatgctggcaatctttttggtccccaaagtcccacttgtttatcagcaagcagaagtt
attcgggagagaacaggttacaaagtaggccacttttgtggcgaaatgggtcaagatttc
tgggatgcccgtagatggcagcgtgagtttgaatcaaaacaggttctagtaatgaccgct
caaattttattgaacattctccggcacagcattatcaaaatggaagccattcatctcctc
attttggacgagtgccatcatgctgtgaagaaacatccatattcgttagtgatgtctgag
ttctatcatacaactccaaaggagaagagaccagctgttttcgggatgacagcctctcct
gtcaatttgaagggtgtttccagccaagaggattgtgctattaagattcgtaatcttgaa
agcaagctggattccgtagtttgtacaataaaagaccgtaaagagctggagaaatatgtc
ccaacgccttcagaaattgtggttgaatatgacaaagcagctacattgtgctcccttcat
gaacaaataaaacaaatggaacaggcggttgaagaagctgcccatgcaagttccagaaga
agcaaatggcaatttatgggggctagagatgctggggcaaaagaagagctacgccttgtt
tatggtgtttctgaaagaacggaaagtgatggagccgctaatctaattcagaagttgagg
gccataaactatgctttgggagaattgggacagtggtgtgcttataaggttgcacattca
tttttgatggccttacaaaatgatgaaagggcaaattaccagcttgatgtgaagtttcaa
gaatcgtacttgagtaaagttgtatctcttttacaatgtcacttgtctgagggagcagtt
tctcatagggatgcaaaaaatataaaaacagagagtgatggtgctctggagggggctagc
attgatgagattgaggagggggagctccctgacagtcatgttgtttctggtggagagcat
gtggatgtgataattggagcagctgtagcagatgggaaagtgactccaaaagtgcagtcg
ttgatcaaaattcttctcaagtatcaatatacagaagattttcgtgcaatcatttttgta
gagcgggttgttgctgccttggttcttcctaaggtttttgccgagcttccatctctaagt
tttgttaagtgtgcaagtctgattgggcacaacaatagtcaagaaatgcgtacatgccag
atgcaggacacaatcaacaagtttcgtgatggtcgagtgacattgttggtggccactagt
gttgccgaagaagggctagatattcggcaatgcaatgttgtcattcgctttgaccttgca
aaaactgttttggcatacattcagtctagaggtcgtgcaaggaagccagggtctgattac
attttgatggtcgagaggggaaatttatcacatgagacattcctaagaaatgctcggaac
agtgaggagagattgcgtcaggaggctatagagagaactgacctaagtcacctgaagggt
acttcaaaattaaattcagtggatacggcaccaggaacagtgtatcaggtggagtcaact
ggtgctgttgtgagcctgaattcttcagttggactcatccatttctactgctcccagctg
cctagtgacagatattcaattcttcgtcctgagtttatcatggagcggcatgagaagcct
ggtggctccacagaatattcatgcaagcttcagcttccctgtaatgcaccttttgaaaag
ctcgagggtcctttatgtagttcaatgcgccttgcacaacaggctgtttgtttggctgcc
tgcaagaaacttcatgagatgggggcattcactgacatgctcttgccagacaagggaagt
ggggaagaaggagaaaaggttaaccagaatgatgagggtgaccctctccctggaactgca
aggcatagagagttctatcctgaaggtgtggctgatattctacggggggagtggattttg
actggtacagatggttgccacagctccaaattgctccctttgtatatgtatgctgtaaaa
tgtgtgaatgatggtacttcaaatgactcattcttgactcaagtttcggattttgctgtg
ctttttggcaatgagctggatgcagaggttttatcgatgtcgatggatctctttgttgct
cgaaccatgataacaaaggcatccctcgtctaccagggacccatagaaattatggaaagt
cagctgatttccctgaagagctttcatgttagaatgatgagcattgtgctggatgttgat
gttgaaccttccagcactccatgggatcctgcaaaggcatatctatttgtccctgtagtt
ggcgagaaatctgtagatcttatcaaagaaattgattggaatcttgttgaaaatatcatt
ggggtagatgaatggaacaatcccctccagagggctcgtcctgatgtgtacttgggcaca
agtgaacgaacactaggtggagaccgaagagagtatggttttgggaaattgcgtcatggc
atggcttttggacagaaatcccatcccacctatgggatcaggggagctattgcacagttt
gatgttgtcaaagcttttggattggtccctaatcgggattccatgggaagcccaaatgaa
gatgttgctcatggcaaattgattatggctgattcctacattaatgcagaagaactcgtg
gggaggattgtaacagctgctcactctgggaagaggttttatgtggattcagtgcggtat
gatatgaatgcagagaactcatttccaaggaaggaggggtatctaggcccgttagagtac
agctcatacgccgattactacaggcaaaaatatggggtggaattgttccataagaaacaa
ccactgataaggggacgtggggtttcatattgcaagaatcttctttctcctcgatttgaa
cgttctgaagcatgtgaaagtgagcatgaagagactcttgataaaacatactatgtgttt
ctgcctcctgagttgtgttttgtacatccacttccgggttcagttgttcgaggtgctcag
cgattgccctctataatgaagagggtcgagagcatgcttcttgcagttcagctgaaggat
gtaattaattatcctgttcctgcttccaagatactggaagcctcgactgctgcttcttgt
caggagacattttgctatgaaagagcagagcttctgggagatgcataccttaagtgggtg
gttagtagattccttttcctcaaatacccccagaagcatgaaggtcagctcactaggatg
aggcaacagatggtgagtaacatggttttgtatcagtatgctcttagtaaaggtctccaa
tcatatatccaagcagatcgctttgctccatctagatgggctgctccaggggtgctgcct
gtctttgatgaggatatcaaggatactgaagctcccttatttggtgatgaaagaatgcct
gctgagactgaatcggagaagagcttccattttgatagttatgaaaatgatgacatggaa
gatggtgaggtggagagcgattcaagttgctatagagttctttctagcaaaacactggca
gatgttgttgaagcgttgattggtgtgtactatgttgaaggtgggaagaatgctgcaaac
catctcatgaaatggattgggatccaggtggaatttgatcctaaggagatagagagcact
agcaagccatgcagtgttccagagagcgtactccggactatcaattttgatactttagaa
ggtgccttgaattataaatttatagataagggccttttggtggaagccattactcatgct
tcaaggccatcatcgggagtttcctgttaccagcgtttggagtttgttggtgatgcagtc
ttggatcatttaattacaaagcatttgttctttacgtacacagatttaccccctggccgc
ttgactgatttgcgagctgcagccgtaaataacgaaaactttgctcgtgtagctgttaag
aacaaactccatctgcaccttcggcatggatccagtgccttggaagcacagattcgtgac
tttgtgaaggacgtacaagatgagttaacaaagccagggtttaattcttttggtctggga
gattgcaaagctcccaaagtgcttggtgacattgttgaatccattgcaggtgcaattttt
ctggacagtgggcgtgatactgctgttgtgtggagggttttccaacccttgcttcatcca
atggtgaccccagaaacacttccaatgcatccggtgagggaactccaggagcgatgccag
caacaggctgaaggcttggaatacaaagccacccgaaatggtaatttagccacggttgaa
gtctacattgatggtgttcagatcggtattgctcagaacccacagaagaagatggcacag
aaattagctgcaaggaatgcactcgtcgttttgaaagatagggaaacagctgaagctaag
gagaaggccgaggaggatgagaagaagaagaatggtacccagacatacaccagacagacc
ttgaatgacatatgcttgcggaggcagtggccaatgccccagtattggtgtgtaaatgag
ggtggtcctgcacatgcaaagaggttcacatattccgtacgtgtgaatactactgatagg
ggatggacagaggattgtgtgggagagcctatgcccagtgttaagaaggcgaaggactct
gcagcaattcttctgctggagcttcttaataaatggtag
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integrated database retrieval system
