Macadamia integrifolia (macadamia nut): 122076544
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Entry
122076544 CDS
T07436
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH1
KO
K12813
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:
5.6.2.6
]
Organism
ming
Macadamia integrifolia (macadamia nut)
Pathway
ming03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ming00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122076544
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ming03041
]
122076544
Enzymes [BR:
ming01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
122076544
Spliceosome [BR:
ming03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
122076544
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
WHD_HA2
AAA_22
DEAD
AAA_19
PWI
AAA_30
nSTAND3
T2SSE
SseB
AAA_16
nSTAND_NTPase5
TsaE
SRP54
AAA_7
ABC_tran
Motif
Other DBs
NCBI-GeneID:
122076544
NCBI-ProteinID:
XP_042497826
LinkDB
All DBs
Position
4:16491997..16525949
Genome browser
AA seq
1047 aa
AA seq
DB search
MPDESNLKTWVSDKLMTLLGYTQPTVVQYVIGLSKQASSPADVVGKLVEFGLSSSTETRV
FAEEIFSRVPHKASGLNNYQKQEKDAAMLVRKQKSYTILDADDDEDDDDNRGGDKISSQS
NKADSHQKRFRKKTEYQDDEDEVVRREEKDRRVRLRTSEVDDNLEAEEARLRDQEERVQL
ERNIRERDAAATRKLAEPPKLSRKEEEEAIRRSKALEDDDTATLRKVSRQEYLKKREQKK
LEEISDEIEDEQYLFEGVKLTEAEYRELSYKKEILELVKKRSEDLDSFTEYRMPEAYDQE
GGVNQEKRFSAALQRYRDLNSGDKMNPFAEQEAWEEHQIGKATLNYGSKDIKQKSDDYQY
VFEDQIEFIKATVIEGDKFEDELPEDQLQKMEISVLQKLQDDRKTLPIYTYREELLQAVN
EHQVLVIVGETGSGKTTQIPQYLHEAGYTKHGKVGCTQPRRVAAMSVAKRVSEEMGVKLG
HEVGYSIRFEDCTSETTVLKYMTDGMLLREFLSEPDLASYSVVMVDEAHERTISTDILFG
LVKDIVRFRSDLKLLISSATLDAEKFSDYFDSAPIFKIPGRRFPVEIHYTKAPEADYLDA
AVVTVLQIHVTQPPGDILVFFTGQEEIETAEEILRHRTRGLGTKIAELIICPIYANLPTE
LQAKIFEPTPEYARKVVLATNIAETSLTIDGIKYVIDPGFCKMKSYNPRTGLESLLITPI
SKASAMQRAGRSGRTGPGKCFRLYTAYNYHHDLEDNTVPEIQRTNLANVVLTLKSLGIHD
LLNFDFMDPPPSEALLKALELLFALNALNNRGELTKVGRRMAEFPLDPMLSKMIVASEKY
ECSEEMISIAAMLSVGNSIFYRPKDKQVHADNARMNFHTGNVGDHIALLKVYSSWKETNF
ATQWCYENYIQVRSMKRARDIRDQLEGLLERVEIELVSNPNDLEGIKKAITSGFFHHSAR
LQKNGSYRTVKNPQTVHIHPSSGLAQVLPRWVVYHELVLTTKEYMRQVTELKPEWLVEIA
PHYYQLKDVEDYGSKKMPRGQGRAERD
NT seq
3144 nt
NT seq
+upstream
nt +downstream
nt
atgccagacgaaagtaatttgaaaacatgggtatcagacaagttgatgactcttttggga
tatactcagcctaccgttgtccagtatgtcattgggttatctaagcaagcttcttcacct
gctgatgttgtgggcaagcttgttgaatttggtttatcttcatcaactgagacccgagtg
tttgctgaagaaatattttctagagttccgcataaagcatccggtttgaataattaccag
aaacaagaaaaagatgcagctatgttggtgaggaagcagaagagttacacgatcttggat
gctgatgacgacgaagatgatgatgataatcgtggtggtgacaaaatctcttctcaatca
aataaagcagattcccatcaaaagcgtttccggaagaaaactgagtatcaagatgatgaa
gatgaggtggtcagaagagaagaaaaagatagacgtgtccggctgcgcacctctgaagtt
gacgacaatttagaggcagaggaagccaggctacgtgatcaggaagagcgggtacaatta
gagaggaacataagagaaagagatgcagcagcgacgcggaagttggcagagccgccaaaa
ttatctaggaaggaggaagaggaggcaattcggagatctaaagccttagaggatgacgat
actgcaactctaagaaaagtatcgagacaagaatacttaaagaaaagagagcaaaaaaag
ctggaggagatcagtgatgaaatagaagatgagcagtatctctttgaaggtgtaaaacta
acagaggcagagtatcgtgagctaagctataagaaagaaattcttgagctagtgaagaag
cggtctgaagatctggatagttttactgagtaccggatgcctgaagcctatgatcaagaa
gggggtgtaaatcaggagaagaggttttctgcagctctgcagcgttatagggacctcaat
tcaggagataagatgaacccatttgccgagcaggaggcatgggaggagcatcagattgga
aaggcaaccttgaattatggttccaaagatataaaacaaaagtcagatgattatcagtat
gtgtttgaggaccagattgagttcatcaaagcaactgtgatagagggtgacaagtttgaa
gatgagctgcctgaggatcagcttcagaagatggagatatcagtgttacagaagcttcag
gatgatagaaaaactctacctatctatacatatcgagaagagctacttcaggctgtcaat
gaacatcaggttcttgtaattgttggtgagaccggatctggaaagacaactcagataccc
cagtatcttcatgaagctggctacacaaaacatgggaaggtaggatgtacccagccacga
cgtgttgcggccatgagcgtcgctaagcgagtttctgaggagatgggagttaagcttggt
catgaggttgggtactcaatccgctttgaagattgtacatctgagactacagttcttaag
tatatgacagatggaatgttgctgagagaattccttagtgaacctgatctggcaagttac
agtgtggtgatggtagatgaggctcatgaaaggacgatttcaacggatattttatttggt
ttggtcaaggacattgtccggtttcgaagtgatctcaagttgctcatctctagtgctact
cttgatgctgagaaattcagcgattacttcgattcagctccgatatttaaaattcctgga
agacgattccccgtcgagatacactacacgaaagcgcctgaagctgactacctggatgct
gctgttgtcactgtccttcaaatacatgtgactcaaccaccgggtgatatactggtgttc
ttcacaggacaggaggaaattgaaacagcagaagagattctgagacaccggacccgaggc
ctgggaacgaagattgctgaactcatcatctgcccaatatatgctaaccttcctactgag
ttgcaagctaaaatttttgaacccactcctgaatatgctcgtaaggttgtcttggcaact
aacatagcggaaacctcattgacaattgacgggattaaatacgtcattgatcctggattt
tgtaagatgaagtcttataacccaagaaccggtttggaatcactactaatcactcccatt
tctaaagcatcagcaatgcaaagggctggtcgatctggacgaacaggtccaggaaagtgc
tttcgtttgtatactgcctacaattatcatcatgatttggaagataatactgtgccagag
atacaaagaactaaccttgcaaatgttgttcttacgcttaagagcttaggtattcatgat
ttgctgaattttgatttcatggaccctcctccgtctgaagcgttactaaaagccttagag
ctgctttttgcacttaatgcactgaataatcgaggggagctcacaaaggtcggcagaaga
atggcagagtttcctcttgatccaatgctttctaaaatgattgttgcttcagagaagtat
gagtgttcggaagagatgatatcaattgctgctatgctttcagttggaaattcaatcttc
taccgtccgaaggacaagcaagtccatgctgacaatgcaaggatgaattttcatacaggg
aatgttggggaccatattgcattgcttaaggtttacagttcttggaaagaaactaatttt
gcaactcagtggtgctatgaaaactatattcaggtcaggagtatgaaacgtgctcgggat
ataagggaccagttggagggtcttttggagagggttgagattgaactggtatcaaatccc
aatgatttagaaggcataaagaaggcaataacttcaggctttttccaccattcggccagg
ttgcaaaagaatggatcctatcgcactgtcaaaaatcctcagactgttcatatacatcca
agttctggtcttgcgcaggtgctccctaggtgggttgtttatcatgagcttgtacttaca
acaaaggaatacatgagacaggtcactgaattaaaacccgagtggctggtggaaatcgca
cctcattattaccagctgaaggatgtggaagattatggatcaaagaaaatgccacgtgga
caaggacgtgcagagagggattga
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