Macadamia integrifolia (macadamia nut): 122076897
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Entry
122076897 CDS
T07436
Name
(RefSeq) zinc finger CCCH domain-containing protein 27-like isoform X1
KO
K13192
RNA-binding protein 26
Organism
ming
Macadamia integrifolia (macadamia nut)
Brite
KEGG Orthology (KO) [BR:
ming00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
ming01009
]
122076897
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ming03019
]
122076897
03041 Spliceosome [BR:
ming03041
]
122076897
Protein phosphatases and associated proteins [BR:
ming01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
122076897
Messenger RNA biogenesis [BR:
ming03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
122076897
Spliceosome [BR:
ming03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA binding proteins (RBPs)
122076897
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
Nup35_RRM_2
PWI
zf_CCCH_4
RRM_Nup35
zf-CCCH
Motif
Other DBs
NCBI-GeneID:
122076897
NCBI-ProteinID:
XP_042498448
LinkDB
All DBs
Position
4:7515520..7528698
Genome browser
AA seq
1103 aa
AA seq
DB search
MVGDMKFEDSSLTGYLVKNLEPLTEADPLILAEYVVALLKKDKPIEELQKLCAENLVEFL
GQGTKSFITKLFQVLEGGSIVAPAESLDAIQKVQPHPSFIAEDPAELKILSPKPEGLSPE
EKEVSDDEDDDRNHKHRRRESRSQSFDKDAQEEFLSRPNRKRNKPCENGQLYVESDPQPS
ETRKEYNFSHSERDLSAKFEKRRPGMAVQPCGPLDLDQRMRVNQAFRGETGARFDLSASL
GRPSLGRGRGRNSGPWSQHDSRFSSVDMLDFALQMAPQGAAPSLFSGRGLPNAGNAQSGS
WSAFGLIPGMPNGSLDTFHPLGLQGTLRPSINPSLSIGIARQRCKDFEERGFCLRGDMCP
MEHGVNRIVVEDVQSLSQFNLPVSLPSARLLGLPSATGASTSVSAPSGLLTNSKGLHGKS
TKPGTNDGGIGLNGVVSSSAGVGEADLYDPDQPLWNTDRQETSSALLRLPSPKTNDVESL
WDTDTSYHHSLRVSDGIDSERPGKNITTTVGSQSAASSVWGRIGTSGIKIETTGANDNAH
YALPSLGSHGNKAKEEPSFSGTAYRGKLTFTGDIDPKSMNSSVTPKRRNDYGHNGGRPLQ
KALRTHFVNGIPQKINKREALLTHFQKFGEVVDIYIPLNSERAFVQFSKREEAEAALKSP
DAVMGNRFIKLWWANRDSIPDDGINGGNTVSAVPHGVTTASVQSQPSITDGAKENIPSAP
PKVSIPASDVPVPAAVHPKPVAVNGPKAIPPVQKKLENLEVLKEQLRKKQEMLDEKRNVF
RRQLDKLEKQATVKGEAASDQAIKRHKVGTATDIAKAASPRPTNPGITGERPGAENSVDK
NVGENGASPSSKTSSPLMLQSPKNSKQLSRPSAPIGPPFLVNRFKLDNRPTAFKILPPLP
AEFVNIAVLKEHFQSFGDLSAVELGDSDPCPRSAGLDPCAIFSARVIFTTRHAAERAFLN
GKCWQGHSLQFAWLATSSNFTSEPGGRENSPIPTPRAPPGAEVPSKTAVSGLSSSSTGKS
TSVGSLDVPAAGDGETKNSEGIKGGAEGMEVVEGFRSSSTPVSSSETHSPKSDALMVEEG
INVSSMHTEPFNAQGSDTVIEGA
NT seq
3312 nt
NT seq
+upstream
nt +downstream
nt
atggttggagatatgaaatttgaggactcgtcattaactggatatctcgtgaagaatctc
gaaccactgacagaggctgaccctctgattcttgcagaatatgtggtagcattgttaaag
aaggacaaacctattgaagagttacaaaagctctgtgctgagaatttagttgaattcctg
ggtcagggtacaaagtctttcatcacaaagttgttccaggtcctagagggtggttctatt
gtagcacctgccgagagtttggatgccatccagaaggttcaaccacatccatccttcatt
gcagaagatccagcagaactgaaaattttgtctccaaagcctgagggcctttctcctgag
gagaaagaggtcagtgatgatgaagatgatgatcgtaaccataagcatcgtagaagggag
tcaagatctcagtcttttgacaaagatgcacaggaagaattcttgagcaggccaaataga
aagcgtaacaagccttgtgaaaatgggcagctatatgtcgaaagtgatcctcagcctagt
gaaacacgaaaagaatataacttttcccattcggagagagatctctctgcaaagtttgaa
aaacgacgtcctggcatggcagtacagccttgtggtccattggatttggatcagaggatg
agagttaaccaggcatttcgtggtgagactggtgctcgttttgatttatctgcatctcta
ggtcgtccttccttaggtaggggaagagggaggaattctggcccctggagccaacatgat
tccaggttcagctctgtggacatgcttgattttgcattacaaatggctccacaaggagct
gcacctagtctattttcaggaaggggattgccaaatgctggaaatgcacagagtggatcc
tggagtgcatttggcttaattccaggaatgcccaatggaagccttgatacattccatcct
cttggtttgcaaggaacactcagaccttcaatcaatccttccttgagtattggcattgcc
cgccaacggtgtaaagattttgaggaacgtggattttgtttgagaggggatatgtgccca
atggagcatggtgtaaatcggattgttgttgaagatgttcagagcctctcacagttcaat
ctccctgtttcgcttccaagtgcacgcctattggggctaccttctgcaacgggagcttca
acttcagttagtgctccttcaggcctgttgacaaatagcaaaggtttgcatggtaaaagt
actaaacctgggacaaatgatggtggaataggcttgaatggagtagtatcttcttctgct
ggtgtgggtgaagctgacctctatgatcctgaccagcctctgtggaatactgaccgtcaa
gagacatcaagcgctcttttaaggctcccttcccctaagactaatgacgttgagtcctta
tgggatactgatacttcttatcatcacagcttaagggtttctgatggcattgacagtgaa
aggccaggtaaaaacattacgacgactgttggttcacagagtgcagcttcttctgtttgg
ggacgaattgggacttcgggaattaaaatagaaactacaggggcaaatgataatgcacat
tatgcactaccttccctgggttctcatgggaataaagcaaaggaagagccaagtttttca
ggtactgcttatcgagggaaactgacttttacgggggacattgatccaaaatctatgaat
tcttctgttactccaaagcgacgaaatgattatgggcataatggtgggcgaccattgcag
aaggccttacgtacgcattttgttaatggtattcctcaaaaaatcaacaagagggaggcc
cttcttacacatttccaaaaatttggggaggttgttgacatttatattccactgaatagt
gaaagagcttttgttcagttctctaaaagagaagaggcagaggctgctctgaagtcacct
gatgctgtgatgggcaaccgtttcatcaagttgtggtgggctaatagggacagcattcct
gatgatggcataaacggtggcaatactgtatcagcagttccccatggtgttacaactgct
tctgttcaatctcagccatctattactgatggagcaaaagaaaatatcccatctgcacct
ccaaaggtcagtatacctgcatccgatgttccagtgcctgctgctgttcaccctaaacct
gttgcggtaaatggtcccaaggctatccctcctgtgcaaaagaagctagaaaatttggag
gttttaaaggagcaactccgcaaaaagcaggaaatgctggacgagaaacgcaatgttttc
cgccgccagctggataagcttgaaaaacaagctacagtcaagggtgaagcagcttctgac
caagctattaagagacataaagtggggactgcaactgatattgcgaaggctgctagtcca
cgtcccacaaatcctggtattactggagaaagacccggtgctgaaaattcagtggataaa
aatgtgggggagaatggtgcatctcccagttcaaaaacaagctcacccctgatgttacag
tcgcctaagaattccaagcagctaagtcgcccatctgcaccaatagggcctccctttctg
gtgaataggttcaagttggacaaccgccctactgcatttaaaattcttccgcctttacca
gctgagtttgtaaatattgctgttttgaaggaacattttcaatcattcggtgatctctct
gcagttgaactaggtgattcagacccttgtcctcgatcggctggtttggatccatgcgca
attttttctgctcgtgtaattttcacaacgcgtcatgcagctgagagggcattcttaaat
ggtaaatgttggcaaggccacagcttacagtttgcgtggctggctacttccagtaatttt
accagtgagccaggtggcagagaaaattctcccattcctactcccagggcccccccagga
gctgaagttcctagtaagacagcagtatctgggttgtcttcatcaagtacaggaaaatca
acaagtgttggttcgctggatgttcctgcagctggggatggtgagactaagaattctgaa
gggataaagggtggagccgagggtatggaagtggtagaaggtttccggtccagttctact
cctgtgtcctcaagtgagactcattcgcctaaaagtgatgctttgatggttgaggaaggc
ataaatgtcagttctatgcatacagagccttttaatgctcaaggatccgatactgtgatt
gagggagcatga
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