Macadamia integrifolia (macadamia nut): 122077096
Help
Entry
122077096 CDS
T07436
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
ming
Macadamia integrifolia (macadamia nut)
Pathway
ming03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ming00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122077096
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ming03041
]
122077096
Enzymes [BR:
ming01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
122077096
Spliceosome [BR:
ming03041
]
Complex C
Other components
Step II factors
122077096
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
S1
HA2_N
Helicase_C
DEAD
AAA_22
AAA_19
AAA
GIPC1_GH2
AAA_16
nSTAND3
AAA_30
Sigma54_activ_2
TsaE
ABC_tran
PhoH
EIF4E-T
Cas3-like_C_2
UvrD-helicase
Motif
Other DBs
NCBI-GeneID:
122077096
NCBI-ProteinID:
XP_042498824
LinkDB
All DBs
Position
4:14291467..14296089
Genome browser
AA seq
1184 aa
AA seq
DB search
MGAEFQNEGLKKLEYLSLVSKVRTEFESHLGFGDKVLAEFITDMGSKCENISEFDSNLKE
NGAEMPDYFVRTLFTIIHAILPPKPKSDKDSKKDASSGKMAMFSGLAIADDKERAKEIEK
EIEEEAKQKDRERNRDRDRDRDRERVRDRVRDSRKVMHRDGYDHERDDRRKRRGYKDEYD
RTDSRSRSGHSRRDRDRRDEDDENVDSRHGVDRRAHRTRQNSRYRSDEPELYKVYAGRVS
RVMETGCFVRLNDFRGQEGLVHVSQISSRRVANAKDIVKRDQEVHVKVISVSGQKLSLSM
RDVDQTTGKDLLPINKSSDDDDALRTNPSDSIQGPRTRTGLSGIKIVEEADTIPSRRPLK
RMSSPEIWEAKQLVAAGVLDVREHPMYDEGDGLLHQEEVAEEELEIELNEDEPAFLQGQS
RYSTDMSPVKIFKNPEGSLSRAAALQSALIKERREVREQQQRTMLDSIPKDLNRPWEDPM
PETGERHLAQELRGVGLSAYDMPEWKKDAFGKALTFGQRSELSIQEQRQSLPIYKLKKEL
IQAVHDNQVLVVIGETGSGKTTQVTQYLAEAGYTIKGKIGCTQPRRVAAMSVAKRVAEEF
GCRLGEEVGYAIRFEDCTGPDTVIKYMTDGMLLMEILIDESLSQYSVIMLDEAHERTIHT
DVLFALLKQLVKRRPDLRLIVTSATLDAEKFSGYFFNCNIFTIPGRTFPVEILYTKQPES
DYLDASLITVLQIHLTEPEGDILLFLTGQEEIDHACQSLYERMKGLGKSVPELIILPVYS
ALPSEMQSRIFDPAPPGKRKVVVATNIAEASLTIDGIFYVIDPGFAKQNVYNPKQGLDSL
VITPISQASSKQRAGRGGRTGPGKCYRLYTESAYRNEMSPTTVPEIQRINLGYTTLTMKA
MGINDLLSFDFMDSPPPQALISAMEQLYSLGALDEEGLLTKLGRKMAEFPLDPPLSKMLL
VSVDLGCSDEILTIIAMIQTGNIFYRPREKQAQADQKRAKFFQPEGDHLTLLAIYEAWKA
KNFSGPWCFENFVQSRSLQRAQDVRKQLLTIMDRYKLDVVSAGKNFTRIRKAITAGFFFH
AARKDPLEGYRTLVENQPVYIHPSSALFQRQPDWVIYHELVMTTKEYMREVTVIDPKWLV
ELAPRFFKVADPTKMSKRKRQERIEPLYDRYHEPNSWRLSKRRA
NT seq
3555 nt
NT seq
+upstream
nt +downstream
nt
atgggagctgagttccaaaacgagggcttgaagaagctagagtacctgtcccttgtctca
aaggtacgcaccgagttcgaatcccatcttgggttcggggacaaggtactggccgagttc
atcactgatatgggcagtaaatgcgaaaacatcagcgaattcgactccaatctaaaggag
aatggtgctgagatgcctgattattttgttcgtactctcttcaccattatccatgccatt
cttccgccaaaacccaaatctgataaagatagtaagaaggacgcttccagtggtaagatg
gctatgttttcgggtcttgcaattgcagacgataaggagagggccaaggaaattgagaag
gaaattgaagaggaagctaagcagaaggatagagagagaaatagggacagggacagagac
agagacagagaaagggtcagggatagagttagagacagtagaaaggttatgcacagagat
ggatatgatcatgagagggacgatagaagaaagcggcgcgggtacaaagatgaatatgat
agaactgactccagaagtaggtcgggacacagccgacgtgacagagatagaagggatgaa
gatgatgagaatgttgacagtcggcatggagtggatagaagggcccatagaacccggcag
aatagccggtaccgttcagatgagcctgaactgtacaaggtttatgcagggcgggtgtct
agagtgatggaaacgggttgctttgttcggctgaatgattttagaggtcaagaaggttta
gtacatgtttctcagatttctagtcgaagggttgccaatgctaaggatattgtgaagcgg
gaccaggaggtgcatgtcaaagtgatttcagtgtcgggccaaaaactaagtctttcaatg
agggatgttgatcagactactggaaaagatctcctcccgattaataagagttcagatgat
gatgatgctttgaggacaaatccttctgactcaatccagggtcctagaactaggacaggg
ctttcagggattaagattgtcgaggaggctgatactatcccatcacgacggccattaaag
cgaatgagctccccagaaatatgggaagcaaagcaacttgttgctgctggtgttctggat
gttagggagcatcctatgtatgatgaaggagatgggttgcttcaccaggaagaggttgct
gaagaagagcttgagattgagctgaatgaggatgagccagccttcttgcaggggcagagc
cgatactctacagacatgtcacctgtgaagatcttcaagaatcctgagggttccttgagt
cgtgcagcagcacttcagtctgctcttatcaaggagcgaagagaggtacgagagcagcaa
cagagaactatgcttgattccatcccaaaggatctcaaccgtccttgggaggatccaatg
ccagagacgggtgagcggcatcttgcacaagaactgaggggtgtgggcttatcagcctat
gacatgccagaatggaagaaggatgcatttgggaaggcactgacatttggccagagatca
gagctctccatacaggaacagaggcagagcttgcccatctacaaattgaagaaagagctt
attcaggctgttcatgacaaccaggtgctggttgtaattggggagacaggatctggcaaa
accactcaagtgacacaatatcttgccgaagcaggttacacgattaagggcaagattgga
tgtacgcagccccgaagagtagctgccatgtccgttgctaagagggtagcagaagagttc
gggtgtcgtttgggggaggaagttggctatgctattcggtttgaggattgcactggtcca
gatactgtcatcaagtatatgactgatggtatgcttctcatggagattttaattgatgag
agcctctcccagtattctgtaatcatgcttgatgaagcccatgagaggacaatccacact
gatgtactgtttgcattactaaagcagcttgttaaaaggcgacctgacctgaggttgatt
gtcacttctgccacattggatgcagagaagttctctggatatttcttcaactgtaatatc
ttcaccattcctgggagaacatttccagttgagatcctgtacacaaaacagcccgaaagt
gactacctagatgcatcactgattactgtcctgcagattcatttgacggaaccagaaggc
gacatcctcctcttcttaactggtcaagaagagattgatcatgcgtgtcagtctctttat
gagagaatgaagggactagggaagagtgtgccagaactgataatattgccagtatacagt
gcccttccaagtgagatgcagtcaaggatttttgatcctgctcctcctgggaagaggaag
gtggttgtggctaccaatattgcagaggcttctttgaccattgatggaatattttatgtc
attgaccctggatttgctaagcagaatgtttataatcctaagcaaggccttgattcactg
gttataactcctatttcacaagcatcgtccaagcaacgtgctggacgtggtgggcggact
ggacctgggaaatgctatcgcctttacactgaaagtgcttaccgtaatgaaatgtcaccg
accactgttcctgagattcagaggataaatcttggttatactacactaacaatgaaggcc
atggggataaatgatcttctgtcttttgattttatggattctcctccacctcaagccctc
atctctgccatggaacaactgtatagtctaggggctttggatgaggaagggcttttgacg
aaattgggtagaaaaatggcagagttccccctcgatccacccttgtccaagatgcttctt
gttagtgtggaccttggatgcagtgatgaaattttaactatcattgccatgattcagacg
ggaaatatcttttacaggcctagggagaaacaagcccaagcagatcagaagagggccaag
ttttttcagcctgagggggaccatctaactctacttgctatttatgaggcttggaaggct
aaaaatttttctggaccctggtgctttgagaattttgttcagtctcgatctttgcaaagg
gctcaggatgtcagaaaacaacttctgaccatcatggacaggtataaattggatgtcgtg
agtgctgggaagaatttcacaaggatacggaaggcgattactgcaggattcttcttccat
gctgctagaaaggaccctctggaaggttataggaccttggttgagaaccagccagtctat
attcacccaagcagtgctctcttccagagacagccagactgggtgatttaccatgagttg
gtaatgactacaaaggagtacatgcgtgaggtcacagttattgaccccaaatggcttgtt
gaattagccccgagattcttcaaggttgctgatccaacaaaaatgagcaaacgcaagcga
caagagcgtattgaaccactttatgatagatatcatgaacctaactcttggcgtttaagt
aaacgccgtgcttga
DBGET
integrated database retrieval system
