Macadamia integrifolia (macadamia nut): 122077309
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Entry
122077309 CDS
T07436
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 38
KO
K18655
ATP-dependent RNA helicase DDX19/DBP5 [EC:
5.6.2.7
]
Organism
ming
Macadamia integrifolia (macadamia nut)
Pathway
ming03013
Nucleocytoplasmic transport
ming03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ming00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
122077309
03015 mRNA surveillance pathway
122077309
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ming03019
]
122077309
Enzymes [BR:
ming01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
122077309
Messenger RNA biogenesis [BR:
ming03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
122077309
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
SH3_Rv0428c
AAA_22
DUF5886
Motif
Other DBs
NCBI-GeneID:
122077309
NCBI-ProteinID:
XP_042499156
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All DBs
Position
4:12641730..12659437
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AA seq
493 aa
AA seq
DB search
MADDKNGAADVIGNLPKVNPPEVRRSWGDEVDDEESESAPSGSGDKAEDLNVASLAIDEN
KNVNKFLDDPEDSSISAVTSGDTPYTSASTFEDLKLSPELLQALYVDMNFERPSKIQAIS
LPMILTPPYKDLIAQAHNGSGKTTCFVLGMLSRVDPTVKTPQALCICPTRELAIQNLEVL
QKMGKYTGITSECAVPMDSTNYIPIAKRPPITAQIVIGTPGTTKKWLSAKKLSTRDMKIL
VFDEADHMLAEDGFQDDSLRIMKDIQKNSAHCQVLLFSATFNEIVKNFVSRVVKDGNQLF
VKKEELSLEAVKQYKVHCPDELSKIEVIKDRIFELGEKLGQTIIFVKTRNSAAMLHKSLV
DYGWQCTTIQGALKQEDRDKIVKEFKDGLTKVLISTDILARGFDQAQVNLVVNYDLPVKH
ATPSEPDYEVYLHRIGRTGRFGRKGAVFNLLCGDRDMMIMEKIERHFGHDIAEVPSWRSD
ADFEAALKAAGLV
NT seq
1482 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgacaagaacggggcagctgatgtaattggtaatttacctaaggtgaatccg
ccggaagttagacgttcttggggtgacgaagtagacgatgaagaatcagaatctgcccca
tctgggtccggagacaaagccgaggatttaaatgttgcttcgctggctattgatgagaac
aagaatgtcaacaagtttctggatgacccagaagattcaagcatcagcgcggttacatcg
ggtgatacaccatatacttctgcgtctacttttgaggacttgaagctgtcgcctgaattg
ctgcaagcattatacgttgatatgaattttgagaggcctagcaagattcaggcaattagc
ttgccaatgattttgactccaccctataaggatttaatagctcaagcgcacaatggttct
ggtaagaccacttgctttgtgcttgggatgttgagtcgggttgatccaaccgttaaaaca
ccgcaggccctttgcatttgtcctacaagagaattggcaatacagaacctggaagttctt
cagaagatggggaagtatacggggataacttctgaatgtgctgttccgatggatagcact
aattatatcccaattgcaaaacggccaccaattactgcacaaatagtgattggtacaccg
ggtacaacaaagaaatggttgtcggcaaagaaacttagcacaagggatatgaaaattctt
gtttttgatgaggctgatcacatgttggccgaggatggctttcaggatgattctttaagg
attatgaaggatattcagaaaaacagtgcacactgccaggtgcttcttttctctgctact
ttcaatgagattgtaaagaattttgtatcgagagtggttaaagatggaaatcaattgttt
gtaaagaaagaagaattgtcactagaggcagtgaagcagtataaggtgcactgtccagat
gaactttccaagatagaagtgatcaaggacagaatctttgaattgggagagaagttggga
caaaccattatatttgtcaaaactagaaatagtgccgccatgttgcataagtcactggtt
gattacggttggcaatgcactactattcaaggtgctcttaagcaagaagacagggacaag
atagtcaaggagtttaaggatggtttaactaaagtcctcatatcaactgatattcttgcc
cgaggttttgatcaagcacaggttaatttggttgtcaattatgatcttccggtgaagcat
gcaactccatctgaacctgactatgaggtgtacttgcataggattggtagaacaggtcgt
tttggccgcaaaggagctgtgttcaacttgctgtgtggtgacagggacatgatgatcatg
gaaaaaattgagaggcattttgggcatgacatagctgaggtcccttcttggagaagtgat
gcagattttgaagctgctttaaaagcagctgggctggtgtag
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