Macadamia integrifolia (macadamia nut): 122079049
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Entry
122079049 CDS
T07436
Name
(RefSeq) DNA repair protein RAD4 isoform X1
KO
K10838
xeroderma pigmentosum group C-complementing protein
Organism
ming
Macadamia integrifolia (macadamia nut)
Pathway
ming03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ming00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
122079049
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ming03400
]
122079049
DNA repair and recombination proteins [BR:
ming03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
XPC-HR23B-CETN2 complex
122079049
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BHD_3
Rad4
BHD_1
BHD_2
Transglut_core
Motif
Other DBs
NCBI-GeneID:
122079049
NCBI-ProteinID:
XP_042501207
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All DBs
Position
5:4021187..4034935
Genome browser
AA seq
1037 aa
AA seq
DB search
MVLGLLAFVSWPPTQPFHYARFISREHSPNRSPKAEAAHSSVSFRDSATKVNVRMRTRNQ
LKRPQASENEDAMKTKHDSESTSRTASEHDSGTLTNKSREAVGRLLKRTNPQGLLRTEKH
DGKLLFHEFDGMLNVGSKGNNKQNIKMNVGYDALLDGITTTDTKGKSLAEEKVEEQTLHS
ASPDKEEGTDDSDWEDGLIPIPDSREHTLATEVTVEFSDSPSSVKRRPIRRASAEDKELA
ELVHKVHLLCLIARGRLIDSACSDPLIQASLLSLLPKHLLNIAKVPKLTANLLAPLVNWF
SRNFYFRGSPVPERSFESSLAYALESHGGSVEEVTALSVALFRALNLTTRFVCILDVASL
KPDMDMSECPNNGSTRGETGIFGSSTLMVARPNQVSASPIQLSSNKTSYQEITHKTSPGV
VCQTSENNLTCKRTQSKDQLAEGLIDSLACKATNAGAEACPTKKTEGPKRKGDLEFEMHL
EMALSATAGAACEGNPSTNLKYVCGTSSDFYSPMKRKKIIKSEESLVSSQGISTAVGSRR
VGAPMCWAEVYCGGENMTGKWVHVDAANAIIDGEQKVEAAAVACRKSLRYVVAFAGHGAK
DVTRRYCMKWYKISSLRVSPNWWDAVLAPLKELESGATGGLVHLDVNPESASKGLSTSQK
CLPDHVSLDRKFSTETSKQHCLDSNAESSAQNSRVATRNSLEDMELETRALTEPLPTNQQ
AYKNHSLYAIEKWLTKYQILYPRGPILGYCSGHPVYPRICVQMLQTKQRWLREGLQVKAN
ENAAKVVKRSLKLGKIQESESGICDEDGGAGTIELYGKWQMEPLCLPCAVNGVVPKNERG
QVDVWSEKCLPPGTVHLRLPRIVPVVKRLEIDFAPAMVGFEFRNGRSLPGFEGVVVCTEF
KDAILDAYEEEEEIRRAEEKKRNEMQAISRWYQLLSSILTQQRLKNTYGEGSSSQAPRDI
HLRDDLCGAQSPDSREDMQYVGCQQGYLQDSKMDDLLSVHNEDHEHIFLEEDQSFDDESS
VRTKRCPCGFSVQVEEL
NT seq
3114 nt
NT seq
+upstream
nt +downstream
nt
atggtcttgggcctcctcgcctttgtctcctggcctcctacccaaccttttcactatgcc
cgttttatttcccgggaacattctccaaaccgaagtccaaaagcggaagccgcgcattcc
tccgtttcgttcagagactcagcgaccaaagtgaacgttcgaatgcggaccagaaatcag
ttgaagcgaccgcaagcttcagaaaatgaggatgcaatgaaaactaaacatgactcagaa
agcacaagtcgtacagcatcagaacatgatagtggcactcttaccaataaatcaagggaa
gctgtgggcaggcttctgaaacgaactaatcctcagggcttattacggacagagaaacat
gacggaaaacttctctttcatgaatttgatggcatgctgaatgttggttcaaagggaaat
aacaaacaaaacattaaaatgaatgtcggatatgatgcacttttagatgggattactact
actgatacaaaggggaaaagtctggcggaagagaaagtggaggagcaaactctgcattct
gcttctcctgacaaagaagaaggtacagatgattctgattgggaagatggtttgataccc
atcccagattctagagagcatactcttgcgacggaggtgactgttgaatttagtgactca
ccatcttctgttaaaaggaggcctattcgaagagcttcggctgaggacaaggaattggct
gaacttgtgcataaagttcatttgctttgtttaatagcacggggaagattaattgacagt
gcttgcagtgatcctcttattcaggcttccttactttcacttttgccaaaacacttgctg
aatatagcgaaagttccgaaactgactgcaaatttgctggcccctcttgtcaattggttc
agtcgtaatttttattttagaggctcacctgtcccagagagatcattcgagtcgagcctg
gcttatgctcttgaaagtcatggaggatctgtagaagaggtcactgcattgtctgtggca
ctattcagagctcttaatctaacaactcggtttgtgtgcatcttggatgtggcctccctc
aaaccagatatggatatgtctgaatgtccaaacaatggctcaacgagaggggagacaggg
atttttggctcttccacgttgatggtggccaggccaaatcaagtgtctgcttctcccatt
cagttgtcttcaaataaaacaagctatcaagaaatcacccacaaaacttctcctggtgtt
gtgtgtcaaacaagtgaaaacaacttgacatgcaagcgcactcaatcaaaagatcaattg
gctgagggtttgatagattcattagcctgcaaagcaaccaatgcaggtgcagaagcatgt
ccaaccaagaaaactgaaggaccaaaaagaaaaggtgatctagagtttgaaatgcactta
gaaatggctctttctgccactgctggagctgcttgtgagggtaatccaagcacaaatttg
aaatacgtgtgtggtacttcatcagatttttattctccaatgaaaagaaagaaaataatt
aaaagtgaagaatctctagtttcctctcagggaatttctactgcagttggatcaagaaga
gtaggagctccaatgtgttgggcagaagtctactgtggtggagaaaacatgacaggaaag
tgggtgcatgttgatgctgccaatgcaattattgatggtgagcagaaggtagaagctgca
gctgtggcctgcagaaagtctctaagatatgtagtcgcttttgctggccatggtgctaaa
gatgtgactcgcaggtattgtatgaagtggtacaagatatcatcactgagagttagtcca
aattggtgggatgcagtgttggcaccgttgaaggagttggaatctggtgctactggaggt
ttggtccatttggatgtaaatccagagagtgcttcaaaaggtctctctacttctcagaaa
tgtcttccagaccatgtcagcttggatcgtaagtttagcacagaaacatctaaacaacac
tgcttggatagcaatgcagaatcttcagcacaaaattccagagttgctaccagaaactct
cttgaggatatggaactggaaactagggcattaactgagccccttccaacaaatcaacag
gcctacaaaaaccattccctttatgctattgaaaaatggcttactaagtatcagatacta
tatccaaggggtcctattcttggttattgttctggtcatccagtatatcctcgcatttgt
gttcaaatgctacagacaaaacaaagatggttgcgggaagggttgcaagtcaaagcaaat
gaaaatgctgcaaaggtggtgaaacgttctctgaagcttggcaaaattcaagaatctgaa
tctggtatttgtgatgaagatggtggtgcaggaactattgaactttatgggaagtggcag
atggaaccgctatgtcttccttgtgctgtaaatggggttgtaccaaagaatgaacgtggc
caagtggatgtgtggtctgagaagtgccttccacctggaactgtgcacctgagactaccc
agaattgtccctgttgtgaagaggctggagattgattttgcccctgcaatggttgggttt
gaatttcgaaatggccgctctcttcctggatttgaaggagtcgtggtttgtactgagttc
aaagatgcaatattagatgcatatgaagaggaggaggagataagaagggctgaagagaag
aaacggaatgaaatgcaagctatttcaaggtggtatcagctgctttcatcaattctaaca
cagcaaaggctgaagaacacttacggggaaggttcgtcttcacaggcccctagagacatt
cacttaagggatgacttatgcggagcccagagtcctgatagtcgagaagacatgcaatat
gttggatgtcaacaaggatatctacaagattccaagatggatgatctattatcagttcat
aatgaggaccatgaacatatatttttagaagaggatcagagttttgatgacgagagctca
gtgcggacaaaacgatgtccctgtggattctcggtccaagtggaggagttgtag
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