Macadamia integrifolia (macadamia nut): 122079208
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Entry
122079208 CDS
T07436
Name
(RefSeq) THO complex subunit 2-like
KO
K12879
THO complex subunit 2
Organism
ming
Macadamia integrifolia (macadamia nut)
Pathway
ming03013
Nucleocytoplasmic transport
ming03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ming00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122079208
09122 Translation
03013 Nucleocytoplasmic transport
122079208
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ming03019
]
122079208
03041 Spliceosome [BR:
ming03041
]
122079208
Messenger RNA biogenesis [BR:
ming03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
122079208
Spliceosome [BR:
ming03041
]
Complex C
Other components
EJC/TREX
122079208
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
122079208
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Tho2
THOC2_N
Thoc2
TPR_MLP1_2
Mua
FapA
ABPF_N
Motif
Other DBs
NCBI-GeneID:
122079208
NCBI-ProteinID:
XP_042501409
LinkDB
All DBs
Position
5:complement(7861330..7892962)
Genome browser
AA seq
1895 aa
AA seq
DB search
MSLPPIDCKYVTEECLREWKNGNSNFKVQTPVPVARFLYEICWTMVRGELPFQKCKAALD
SVEFADEVSNEEMGSNFVDIVTQMAQDITLSGEHRGRLIKMAKWLVESALVPLRLFQERC
EEEFLWEAEMIKIKAQDLKAKEVRVNTRLLYQQTKFNLLREESEGYAKLVTLLCQSGSEV
STKNVSAATISIIKSLIGHFDLDPNRVFDIVMECFELQPNNNVFLDLIPIFPKSHASQVL
GFKFQYYQRMDVNSPVPSGLYRLAAMLVKEEFIDLDSIYAHLLPKDEEAFENYDAFSVKR
FDEANKIGKINLAATGKDLMDDEKQGDVTIDLFAALDMESEAVKECSLEMENNQSLGLLS
GLLSVDDWYHAQMLFDRLSPLNPVAYTQICEGLFRVIEKVISSAYTIIRQTHLQSFGFLS
GSASENMETDAPSVQKSFIDLPAELFQMLASAGPYLHRDAILLQKVCRVLRGYYLSALEL
VAGGGATFCSDRGSRDPRLHLKEARMRVEEALGTCLLPSLQLIPANPAVGQEIWEVLSLL
PYEVRYRLYGEWEKDDERIPMVLAARQTAKLDTRRILKRLAKENLKQLGRMVAKLAHANP
MTVLRTIVHQIEAYRDMITPVVDAFKYLTQLEYDVLEYVVIERLAQVGREKLKDDGLNVS
DWLQSLASFWGHLCKKYPSMELRGLFQYLVNQLKKGQGIELVLLQELIQQMANVQYTENM
TEEQLDAMAGSETLRYQATSFGITRNNKALIKSTNRLRDALLPKEEPKLAIPLLLLIAQH
PSVVIINADAPYIKMVSEQFDRCHGTLLQYVEFLYSAITPAVNYAQLIPSLDDLVHKYHL
EPEVAFLIYRPVMRLFKCSSGSDICWPSDDIEEPNTSIADQESESSISSANLVLDLGSQK
STTWSDLLVTVRTILPSKAWNSLSPDLYATFWGLTLYDLHVPRNRYESEIAKQQAALKAL
EELSDNSNSAIIKRKKDKERIQESLDRLTAELQKHEENVASVRQRLAREKDKWLSSCPDT
LKINMEFLQRCIFPRCIFSMPDAVYCAEFVHTLHSLGTPFFNTVNHIDVLICKTLQPMIC
CCTEYEAGRLGRFLYETLKMAYHWKSDESIYERECGNMPGFAVYYRYPNSQRVTYSQFIK
VHWKWSGRITRLLIQCLESTEYMEIRNALIMLTKISGVFPVTRKSGINLEKRVVKIKGDE
REDLKVLAAGVAAALAGRKSSWVSEEEFSMGHVDLKPAPSSATKSSAGNLVTGSNGSALN
ISQVETVGPRNTSATQLPDLGNLIKEQMLRTKPVDGRLDRAESNVFVKHDSGQVKSKGGS
LVNGLDTQSIIPSGSGQVGSSKANETQNHADEPAKGTLDENMVKGGPKTAESELRPTLKR
AAAGSLLKQPKQELAKDENKSGKAVGRIAGSSNSDRDFSVHPSEVRQIGVVNASSAATTN
GSTVTLSTKGSTASRKMSMDMHGNMPKIESGSVKSSELRGPAGKDADENEVSEVTRPFSS
RPAHSPLHDDASNASKSAEKQQKRPSPAEEQERTNKRRKGDGEGKDLEGDVRISDKERSG
DVRVSDKSHLADVDKTGTDEQNLSRATDKLLDRPKDKVSERHDRDHRERLERPDKSLGDD
ILAEKSRDRSMERYGGERSVERAQDRGADRNSDRISDKGKDDRTKDDRGKPRYSETSSEK
SHADDRFHGQSLPPPPPLPPNVVPQSVNANRRDEDADRRVSNTRHIQRLSPRHEEKERRR
SEENLLVSQDDAKHRREVEFRERKRDERDGPSVKVEEREKDKVNLLKDEVDANAASKRRK
LKREHLSSGEAGDYSLAVPPPPPLGLGISQSYDGRERGDKKGAMAQRSGYLGEPVPRVHG
KEATSKVTRRDDHIYEREWEDEKRQRAEPKRRHRK
NT seq
5688 nt
NT seq
+upstream
nt +downstream
nt
atgtctcttcctcctattgattgtaaatatgtcacagaagagtgtcttcgggagtggaag
aatggcaacagcaatttcaaagttcagactccggtgccagtggctcggtttctctatgaa
atctgttggactatggtacgaggagaattacccttccagaagtgcaaagcagcgttggat
tcagttgagtttgctgatgaagtatcaaatgaagagatgggttcgaattttgtcgatatc
gtaacccaaatggctcaagatattacattgtctggggaacaccgtggtcgccttatcaaa
atggcaaagtggctggtggagtctgctttggttccattgaggcttttccaggagcgatgc
gaggaagaatttctgtgggaggctgaaatgatcaagataaaggctcaggatttaaaggca
aaagaggtcagagtaaacactcgccttctttatcagcaaacaaaatttaaccttctccga
gaagagagtgagggttatgccaaactggttacacttctctgtcaaagtggttctgaagtt
tcgactaagaatgtgtcggctgcaactatcagcataattaagtcattaattgggcacttt
gatctggacccaaatcgtgtttttgatattgttatggagtgttttgaacttcagcccaat
aacaatgtcttccttgacctgatacctatatttcccaagtcccatgcttctcaagtgctg
gggtttaaatttcaatattatcagcggatggatgtgaatagtcctgtgccttctgggctt
tatcggcttgcagcaatgttagtgaaagaggagttcattgatcttgatagcatatatgct
cacctgcttccaaaggatgaggaggcatttgagaattatgatgcattttcagtgaagcgg
tttgatgaggctaacaaaatcggaaaaataaatcttgccgctactgggaaggatctgatg
gatgatgagaaacaaggggatgtgacaattgatctttttgctgccttggacatggaaagt
gaagctgtcaaagaatgctcccttgagatggaaaacaatcagagtttgggtttgcttagt
ggattactttcagtggatgactggtatcatgctcagatgttgtttgatcgtctctcccca
cttaatcctgtggcttatacacagatttgtgagggcttatttagggtgattgagaaggtc
atctcttcagcatacaccattatccgtcagacacaccttcagagttttgggtttttatcc
ggatctgcttctgagaacatggagacagatgcaccatcggtccagaaatcttttattgat
cttcctgctgaactcttccaaatgcttgcttctgctggtccttatctccaccgtgatgct
atactgctccagaaggtctgtagagtattaagaggctactacctgtctgccctggagctt
gttgctggtggaggagctactttctgtagtgacagggggagtcgagatcctcgcttgcac
ttaaaggaagctcggatgagggttgaggaagccctagggacatgtttacttccttcattg
cagttgatacctgcaaatcctgcagttggacaggagatatgggaagtactgagtctcctc
ccttatgaggtgcgttatcgtttgtatggtgaatgggagaaagatgatgagcggattcct
atggttttagctgcaaggcagacagcgaagttggatacgagaagaatcttgaaaaggcta
gcaaaggaaaacttgaaacagctgggtcgaatggtggcgaaactagcccatgccaatcca
atgactgtacttcgaacaattgttcaccagattgaagcttacagggatatgatcacacca
gttgtggatgcatttaaatatttgacgcagcttgagtacgatgttttggaatatgtcgtg
atcgagcgcttggcgcaagtgggacgtgagaaactaaaagatgatggccttaatgtatca
gattggcttcaatctttggcttctttttggggccacttgtgcaagaagtatccctcaatg
gaactgaggggactgttccagtatcttgtgaatcaattgaaaaaggggcaggggattgag
cttgtcctcttgcaggagcttatccaacaaatggcaaatgtccagtataccgaaaacatg
acagaggagcagctggatgcaatggcagggagtgaaacgctacgatatcaagctacctct
tttgggataacgaggaataacaaggcactgatcaaatcgactaatagactgagagacgca
ttgctcccaaaggaagaacctaagttagccattcctctgctattgctcatagctcaacat
ccctctgtggtcatcataaatgctgatgcaccatacattaagatggtcagtgaacagttc
gatagatgccatggaacccttctgcaatatgtggaattcctttatagtgcaataactcca
gctgtaaactatgctcagctgatcccatctcttgatgatcttgtccacaaataccatctt
gagcctgaggtagcctttctaatataccggcctgtaatgaggctcttcaagtgttcaagt
ggttctgatatctgctggccttctgatgacattgaagagccaaacacatcaattgcagac
caggagtctgaatcctcaatctcatctgctaatttggtcctggatcttggttctcagaag
tctaccacgtggtctgatcttcttgttacagtgagaacaattttaccttcaaaagcttgg
aacagcctctcccctgatctctatgctacattttgggggctcacactctatgatctccat
gttcctcggaaccgttatgaatctgagatagctaagcagcaagctgctctgaaagcttta
gaagagctttctgataattcaaattcagctatcatcaaacggaagaaagacaaggaaaga
atccaggaatctctagatcgcttgaccgctgaactccaaaagcatgaggaaaatgttgca
tctgttcgtcagaggcttgcacgtgaaaaggataaatggcttagttcgtgcccagatact
ttgaaaattaacatggagtttcttcaacgctgtattttcccgcgctgtatttttagcatg
ccagatgcagtttactgtgctgaatttgtgcacaccctacattctcttggaactccattt
tttaacactgttaatcatatcgatgttctcatatgcaagacattacaacctatgatctgc
tgttgcactgaatatgaagctggtagacttgggaggtttttgtatgagacgctaaaaatg
gcttaccattggaagagtgatgaatcaatatatgaacgtgagtgtgggaacatgccaggc
tttgctgtctattatagatatccgaacagtcagcgagtcacatatagccagtttattaag
gtacactggaaatggagcggacgaattacacgcttgctcattcagtgcttggaatccact
gaatatatggagatccgtaatgctctcataatgttgacaaaaatttcgggtgtttttcca
gttactagaaagagtggaattaatcttgagaagcgggtggttaaaattaaaggggacgag
agagaggatctcaaggtattggctgcaggtgttgctgcagctttggctggccggaagagt
tcatgggtttctgaggaggaatttagcatggggcatgttgatttgaagccagcaccgtca
tctgccacaaaatcttcagctggtaacttagtaactggttccaatggttctgctcttaat
atttctcaagttgagacagtcgggccaaggaatacctctgcaacccagctcccagatttg
ggaaatcttatcaaggagcagatgctgcggacaaaacctgttgatgggaggcttgaccgg
gcagaaagcaatgtgtttgtgaaacatgattcaggacaagttaaatcgaaaggtggttca
ttagtgaatgggttagatacccaatcaattataccttcaggttctggtcaagttggatca
tcgaaagcaaatgaaactcaaaaccatgcagatgagcctgcaaaaggcacattggatgaa
aacatggtgaaaggtggtccgaaaactgcggaatctgagttgagaccgacactaaaacgg
gcagctgctggatctcttttgaagcaaccaaaacaggagcttgcaaaagatgaaaataaa
tctggaaaagctgttggcagaattgctggttcttccaatagtgatagagatttctctgtg
catccatctgaagttaggcaaattggtgtggtcaatgcttcttctgcagctacaaccaat
ggtagcactgttacactttccactaaaggctctactgcatctagaaaaatgtccatggat
atgcatggtaatatgccgaagatagagagtggatctgttaaatcttctgaattgaggggt
cctgctggaaaggatgcagacgaaaatgaagtttctgaagtaacaaggcctttctcgtct
cgacctgctcactctcccctccatgatgatgcttccaatgcatcgaagtctgcagagaag
caacaaaaaagacctagtccagctgaagaacaggagagaacaaacaagcggaggaaaggt
gatggagaagggaaagacttggagggtgatgttcggatctctgataaggagaggtctggg
gatgtacgagtttctgacaagtctcatcttgcagatgttgacaagactggaactgacgaa
caaaatcttagtagggctacagataagcttttggatagacccaaagataaggtaagtgaa
aggcatgacagggaccatagagaaagattggaacgtcctgataagtcgcttggagatgat
attttagcagaaaagtcaagggataggtcaatggaaagatatgggggagagcgttcagtt
gaaagagcacaggacagaggggcagatagaaattctgataggatatctgacaaaggtaag
gatgacagaactaaagatgatcgaggtaaacctcgctacagcgagacatcttctgaaaag
tcccatgctgatgatcgttttcatggacaaagcttgcctccaccgccaccactacctcca
aatgtagttcctcaatctgttaatgctaatcgaagagatgaagatgctgacagaagggtc
agtaataccagacacattcagaggctttctcctaggcatgaagaaaaagaacggagacgc
tctgaggaaaacttgttggtttcacaggatgatgcgaagcatagaagagaggttgaattt
cgagagagaaaacgggacgaacgggatggtccatcagtgaaggtggaggagagggagaag
gacaaagtaaacctattaaaggacgaggtggatgcaaatgcagcatccaaaagacggaaa
cttaaaagggagcacctatcatctggggaagcgggtgattattcgttggcggtcccacca
ccacctcctcttggtcttggtatttcacagtcatatgatggaagagaacgaggagacaag
aaaggggccatggctcaaaggtcaggctacttgggggaaccagtgccgagggttcatgga
aaagaagctaccagcaaggttactcgtcgggatgatcacatttatgaaagagaatgggag
gatgagaagaggcagagagctgaaccgaaacgaaggcatcgaaaatga
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integrated database retrieval system
