Macadamia integrifolia (macadamia nut): 122079289
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Entry
122079289 CDS
T07436
Name
(RefSeq) DNA mismatch repair protein MSH2
KO
K08735
DNA mismatch repair protein MSH2
Organism
ming
Macadamia integrifolia (macadamia nut)
Pathway
ming03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ming00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
122079289
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ming03400
]
122079289
DNA repair and recombination proteins [BR:
ming03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
122079289
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_IV
MutS_II
MutS_I
ATG17_like
Motif
Other DBs
NCBI-GeneID:
122079289
NCBI-ProteinID:
XP_042501576
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Position
5:16912138..16952785
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AA seq
942 aa
AA seq
DB search
MEDNLQEQNKLPELKLDAKQAQGFISFFKTLPNDPRAVRLFDRRDYYTAHGDNAMFIAKT
YYHTTTAMRQLGTASNGVSSVSVSKSMFETIARDLLLERTDHTLELYEGSGSNWRLTKSG
TPGNLGSFEDILFANNEMQDSPVIVALCPNFRENECVVGMGYVDLTKRILGLAEFLDDGQ
FTNVESALVALGCKECLLPTEGGKSIQSKTLLDALSRCGVLLTERKKTEFKSRDLVQDLG
RLVKGSIEPVRDLISSFEYASWALGGLLSYAELLADESNYGNYTIRRYNLDSFMRLDSAA
MRALNVLESKTDANKNFSLFGLMNRTCTAGMGKRLLNRWLKQPLLDVNEINCRLDLVHAF
VEDTALRQDLRQHLKRISDIERLMHTLEKKRATLQHVVKLYQSSIRFPYIRSALERYDGQ
YSTLIKDKYLDPFEHWTDDDHLNKFVGLVEASVDLDQLENGEYMISSGYDPKLSALKDER
DAVEKQIHNLHKQIANDLDLPIDKALKLDKGTQFGHVFRITKKEEPKVRKKLTTHFIVLE
TRKDGVKFTNTKLKKLGDQYQKLLEEYTSCQKELVVRVVQTAASFHEVFESLAGILSELD
VLLSFADLATSCPTPYTRPDITPSDEGDIILEGSRHPCVEAQDGVNFIPNDCRLIRGKSW
FQIITGPNMGGKSTFIRQVGVNILMAQVGSFVPCDKANISVRDCIFARVGAGDCQLRGVS
TFMQEMLETASILKGATDKSLVIIDELGRGTSTYDGFGLAWAICEHLVEVTRAPTLFATH
FHELTALAHDNSDHEPQRQSLLGVENYHVSAHIDSTSRKLTMLYKVEPGACDQSFGIHVA
EFANFPESVVSLAREKAAELENFSPVSVISNDSREELGSKRKRKCGPDEMSSGAVRANKF
LQDFSALPLEEMNLKQALQHVNKLRSDFEKDAADCRWLQQFF
NT seq
2829 nt
NT seq
+upstream
nt +downstream
nt
atggaggataacttgcaggagcagaataagctgccagagctaaaacttgatgccaagcaa
gctcaagggtttatttcattcttcaaaaccctaccaaatgacccaagggctgttcgatta
tttgatcgtcgggattactacactgcccacggagataatgcgatgttcattgccaagaca
tactatcatacaactacggctatgcggcaactgggtactgcttctaatggtgtttctagc
gtgagtgtcagtaaaagtatgtttgaaaccattgctcgtgatctcctgctggagagaaca
gaccatactttggagctctacgagggtagtgggtcaaactggaggttgacaaaaagtgga
acaccaggaaaccttggtagttttgaagatattttgtttgccaataatgaaatgcaggac
tctcctgtgattgttgcactttgccctaacttccgcgaaaatgagtgtgttgtggggatg
ggctatgtagacctaactaagaggatacttgggttggcagaatttcttgatgatggccaa
tttacaaatgtcgagtcggctttggtggctcttggttgcaaagagtgtctcctgccgact
gagggaggaaagtccatccagagcaaaactctgcttgatgcattgtctagatgcggtgtg
cttctgactgagagaaagaaaacggaatttaagtcaagagatttggtgcaggatcttggt
cgacttgtcaaaggttctattgaaccagttcgtgatttgatttccagctttgaatatgct
tcctgggctctggggggattactttcttatgcagaattacttgcagatgagagcaactat
ggaaattataccatccggcggtataaccttgacagtttcatgaggttagattctgcggct
atgagagcattaaatgtcctggaaagcaaaacagatgcaaacaaaaattttagcttgttc
ggtcttatgaacagaacctgtactgctggcatgggaaaacgattactaaacaggtggttg
aaacaacctttattagatgtgaatgagatcaattgtaggctggatttggtccatgcgttt
gtggaggatactgcccttcgtcaggatcttaggcagcatctaaaaagaatttcagatata
gagcgtctgatgcatactcttgaaaagaaaagggctactctgcaacacgttgtaaaactt
tatcagtcgagtatccggtttccttacatcagaagtgccctggagcggtatgatgggcaa
tattcaacattgattaaggacaaatatctagatccctttgagcactggactgatgatgat
cacttgaacaagtttgttggtctcgttgaagcttctgttgacctggaccagcttgagaat
ggggagtacatgatctcttctggttatgacccaaaactatcagcgctgaaggatgagcga
gatgcagtcgaaaagcagatacataatttacataaacaaattgccaatgaccttgatctt
cccatagacaaggcactgaagttagacaaaggcacacaatttggacatgtctttagaatc
acaaaaaaagaggagccaaaagttagaaagaagcttaccactcattttattgtccttgaa
acacggaaggacggggtcaagtttacaaacacaaagcttaaaaaattaggggatcaatat
cagaagctacttgaggagtacactagttgtcaaaaagagctggttgttcgagtagttcaa
actgcagcaagttttcatgaggtcttcgagtctttagctgggattctttcagaactggac
gtcttgcttagttttgctgatctggctactagttgtcctactccatacacacgaccagat
attactccttctgatgaaggggatattatacttgaaggtagtaggcatccttgtgtggag
gctcaagatggggtgaattttataccaaatgattgtagacttataaggggaaagagttgg
ttccagattataacagggccaaatatgggtggaaaatcaacattcatccgccaggttggt
gtgaacatcctgatggcacaagttggttcatttgttccttgtgacaaagcaaacattagt
gttcgtgattgtatttttgctcgtgtaggtgcgggtgattgccaattgcgtggggtctct
actttcatgcaagaaatgcttgaaactgcgtcaatattgaaaggagcgactgataagtct
cttgtaattattgatgagttaggccgtgggacgtcaacttatgatggattcggtttagcg
tgggctatatgtgagcatcttgtagaggtcacccgagcaccaactttgtttgcaacacat
tttcatgaattgacggcattagctcatgataatagtgatcatgagcctcaaaggcagtcc
ttacttggtgtggagaattatcatgtcagtgcacatattgattcaacaagtcgcaaactg
acaatgctttacaaggttgaaccaggggcttgtgatcaaagttttggtattcatgttgcg
gagtttgcaaacttccctgagagtgttgtttcccttgcaagagaaaaggctgcggagttg
gaaaatttttcaccagtttcagtcatttcaaatgactcaagggaagagcttgggagtaaa
cgcaagcgaaaatgtggtcctgatgaaatgtcaagtggtgctgttcgggcaaacaagttc
ttgcaggacttttctgcattgccattagaggagatgaacttgaagcaggccttgcaacat
gtgaacaaattgagaagtgattttgagaaagatgcagctgattgtcgctggctccagcaa
tttttctag
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