Macadamia integrifolia (macadamia nut): 122079329
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Entry
122079329 CDS
T07436
Name
(RefSeq) polyadenylation and cleavage factor homolog 4-like isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
ming
Macadamia integrifolia (macadamia nut)
Pathway
ming03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ming00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
122079329
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ming03021
]
122079329
03019 Messenger RNA biogenesis [BR:
ming03019
]
122079329
Transcription machinery [BR:
ming03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
122079329
Messenger RNA biogenesis [BR:
ming03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
122079329
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf_PCFS4
CID
zf_UBZ
Pcf11_C
Motif
Other DBs
NCBI-GeneID:
122079329
NCBI-ProteinID:
XP_042501642
LinkDB
All DBs
Position
5:13771628..13791838
Genome browser
AA seq
1073 aa
AA seq
DB search
MEEERFVVSSRENPRNLGFVPERGSGTGSSSNNSKVMPNDLIQKPPPPVLDRFRALLKER
EEELRVSDEDDVPAPSAEDIVRLYEEVLSELTFNSKPIITELTIIAGEQREYGDGIADAI
CARILEVPVEQKLPSLYLLDSIVKNIGCEYVRYFASRLPEVFCEAYRQVHPSLHPAMRHL
FGTWSAVFPPLVLRIIEAELKLASSVNHPSSGLTVLKSSESPSPRPTHGIHVNPKYLEAR
CQFEHSTMDTRHSGGGSSSLQIYGQKPAIGYDEYDIDHSDVLGTQKLGSPQGAVRTSSVG
GIDRLHPSKNRLTRSSSPSRIGHPRSLSPLADRFTTDTSPGRVVERASPSHFGIDSRLGR
KSDGKNGDGERTDWWKRWSTDNYQQVENSSAYLSNGPDQQSPRALIDAYGNYGGKNTLTE
KPLNIGRIDVNGLSIKTDKRWQNNEEEEYVWEDMSPTLADRSRSNDLMPHNPPLDSFNGR
AGLGRSGAASLEHDYRMGNWPSRGQLAKDDNAEDGVSALGFGHGSMSKKPLSGPGTRNES
TRIPSSHYPREPWSLPHHFPRSLQPNLDPNTRARTGQMSYPAGGMAMSAGQKLGLQIENF
PDTEGQFQRFSSAMSRMGSSSPDSSNVDLVSPMMPMSTLEKHLGQKPHSPPLGQFPWPPV
NVPRSHPLPLPPILPQQKQIKSPFDVMDVNKPILNQIPNKSSMLPGQQVDAFERKTHSSS
KLVQWPNRQVGLISLNQKNQGEASVRQLQLVQPQDAGESFVPSAAPQVSSHLMTQSLNQG
QIPQGHGPVMSSILSNPMPGVSSSVTIPSIYNNSFHLQGGSLPPLPPGPPPTSSQMGPMP
QNVGPIGMQAPTGSPFSGLISSLMAQGLISLTTSASVEDSVGVDFNPDLLKVRHESAIKA
LYADLPRQCTTCGVRFKCQEEHSSHMDWHVTKNRISKNRKQKPSRKWFVSTSVWLSGAEA
LGTDAVPGFLPTEAVVEKRVDEEMAVPADENQNVCELCGEPFDDFYSDETEEWMYKGAVY
LNAPDGSTAGMDRSQLGPIVHAKCRSESTVASPEDFVLDEGDKEGNQRKKMRS
NT seq
3222 nt
NT seq
+upstream
nt +downstream
nt
atggaagaagagaggttcgtcgtctcctccagagagaaccctagaaatttagggtttgta
ccagaacgtggttcgggcaccggcagcagtagcaataatagcaaggtcatgcccaatgac
ctcatccagaagcctcctcccccagttctggatcggtttagggctcttttgaaggagagg
gaagaggagttgagggtctctgacgaggacgatgttccagcgccgagtgctgaagacatt
gttcgactttacgaagaggttttgtcggagcttacgttcaattcgaagcctatcataacc
gagctaacgataatcgccggagagcagagggagtacggcgatggaattgctgatgcaatt
tgcgcccggattctcgaggtgcctgttgagcaaaaattgccttctttatatcttcttgat
agtatcgtgaagaacattggttgtgaatatgtgagatactttgcttcccgtctccctgag
gtattttgtgaagcatataggcaagttcaccctagcttgcatccagccatgcggcaccta
tttggcacctggtcagcggtattcccacctttagttcttcgcataattgaggcagagcta
aaattggcttcttctgtaaaccatccgtcatctggcttgacggttttaaaatcgtccgaa
tctccatctcctcgaccaactcatggaatacatgtgaatccaaaatatttggaggcgaga
tgtcaatttgaacattcaaccatggatactcgacattcaggagggggttcatcaagtcta
cagatatatggacagaagcctgccattgggtatgatgaatatgatattgatcattcagat
gtcctgggaacccagaaattaggatctcctcagggtgctgttcgtacatcatctgttggt
gggatagacagactacacccttcaaaaaatagacttacaaggtcctcttctccttcaaga
attgggcatcctagatccttatcgccattggctgataggttcacaactgatacttcacca
ggaagggttgttgaaagggcttctccatctcattttggaattgattccaggcttggcaga
aagagtgatgggaagaatggggatggggagaggactgactggtggaaacgttggtctact
gacaattatcagcaggtagaaaattctagtgcatacctcagtaatggacctgatcagcaa
agtccaagagctctaattgatgcttatggaaattacggagggaaaaatacactgactgag
aagcctctgaacattggccggattgatgtaaatggtctaagcattaaaacggataaaaga
tggcagaataatgaagaagaagagtatgtttgggaagatatgagcccaactttagcagac
cgtagtaggagtaatgatctgatgccacataatcctcctctagatagcttcaacggaaga
gctggtttaggaagatcaggtgctgcaagcttggaacatgattacagaatgggtaattgg
cctagtcggggtcagctagcaaaggatgacaatgctgaagatggagtttctgcccttggt
tttggacatggatccatgagtaagaagcctctgagtggtccaggaactcgaaatgaatcc
actcggattccaagttctcactatcctcgggagccttggagtttacctcatcacttccct
cggtccttacaaccaaacctggacccaaacacaagagcaagaactggtcagatgtcgtac
ccagcaggtggaatggctatgtcagctggtcagaaactgggacttcagattgaaaatttt
ccagatactgagggacaatttcaaagattctctagtgcaatgtcaagaatgggttcttcg
agcccagattcttcgaacgtggatcttgtgtcacctatgatgccaatgtcaacgctggaa
aagcatctgggacaaaagcctcattcgcctcccctgggacaatttccttggcctccagtt
aatgtgcctagatctcatccacttcctttgccccctattcttccacaacagaagcaaatt
aagagtccatttgatgtaatggatgttaacaagccaatcctgaatcaaattccaaacaaa
tcttccatgttgcctgggcagcaggtggatgcttttgaaaggaaaacacatagttcaagc
aagctggtgcaatggcccaatcggcaggttggattgatttcattgaatcagaaaaaccag
ggagaagcttcagtgcgacagctgcaattagttcagcctcaggatgctggggaaagtttt
gttccctctgctgctcctcaggtctcatctcatttaatgacacaatccttgaatcaggga
caaattccacaagggcatggccccgttatgagttcaattttgtccaatccaatgcctggg
gtttcttcctctgtaactatacctagtatatacaataactcattccatttgcagggtgga
tccttgcctcctttacctcctggtcctcctcctacctcatcacaaatgggacccatgcct
caaaatgtgggccctattggaatgcaggcaccaactggaagtccattctctggtctcatt
agttctctcatggctcagggtttgatttcattgacaacttcggcttcagtggaggattct
gttggagttgacttcaatccggatcttctcaaggttcggcatgaatctgcgataaaggct
ttatatgctgatcttccaagacagtgcacaacatgtggtgtgcgtttcaaatgtcaagag
gaacacagtagtcacatggattggcatgtgaccaagaatcggatatctaaaaaccgtaag
cagaaaccctctcgcaagtggtttgtgagtactagtgtgtggctcagtggtgcagaggca
ttgggaactgatgcagttcctgggtttttgcctactgaagctgttgtggaaaaaagggtt
gatgaagaaatggctgttcctgctgatgagaatcagaatgtgtgtgaattgtgcggggag
ccttttgacgacttttatagcgacgagactgaggaatggatgtataaaggggctgtctat
ttaaatgcacctgatggatcaacagcaggcatggatagatctcagctgggtccaattgtt
catgcaaagtgcagatcagagtctacagtagcttcccctgaagattttgtactagatgaa
ggggataaagagggtaatcaaagaaaaaagatgcggagttag
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