Macadamia integrifolia (macadamia nut): 122079417
Help
Entry
122079417 CDS
T07436
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 20 isoform X1
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
ming
Macadamia integrifolia (macadamia nut)
Pathway
ming03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ming00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122079417
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ming03041
]
122079417
03009 Ribosome biogenesis [BR:
ming03009
]
122079417
Enzymes [BR:
ming01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
122079417
Spliceosome [BR:
ming03041
]
Complex A
U1 snRNP components
U1 related factors
122079417
Complex B
122079417
Ribosome biogenesis [BR:
ming03009
]
Eukaryotic type
Pre-60S particles
Helicases
122079417
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Motif
Other DBs
NCBI-GeneID:
122079417
NCBI-ProteinID:
XP_042501793
LinkDB
All DBs
Position
5:38126347..38138495
Genome browser
AA seq
699 aa
AA seq
DB search
MAAMMNPYDPRYTDPNSYRERRSGLMAPQQTMSPSMMGGVGGGADPNVGSGGPLAYGRSP
SAFVGGRGGGGVGVPGGPGPGSFNGYPPFQPDIGRGFDIGRGGGGRGFSAGRGGGRGGGG
ERGGRFSVLDRSGRMSDGDRGGSGFRGGRDVGRGRGGIRGGRDGGRRGGGSFGGRGFDSG
RGGGRASSGRGGGRSFDSGRGGGRGRDGGKSRGELNSILLPKQDFGDLVPFEKNFYVESP
SVQAMTEQEVALYRARREITVEGYDVPKPIRLFQETNFPAYCLEVMAKLGFVEPTPIQSQ
GWPMALKGRDLIGIAETGSGKTLAYLMPALVHVSAQRRLIRGEGPIVLVLAPTRELAVQI
QEEVAKFGSRSSMRSTCIYGGAPKGPQIRDLQAGVEIVIATPGRLIDMLEAQHTNLRRVT
YLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLYWSATWPREVEALARQFLHNPYKVIIG
SVDLKANHSINQVVEVMTDMEKYNRLIKLLSEMMDGSRILIFLETKKGCDQVTRQLRMDG
WPALSIHGDKNQAERDWVLAEFKSGRSPIMTATDVAARGLDVKDIKCVINYDFPSSLEDY
VHRIGRTGRAGAKGTAFTFFTHANAKFVRDLIKILQESGQIVSPALAALARSGGYGGGGS
GGNFRSRGRGGGGGGGGGFGNRALISGSNTIPLGSKRPW
NT seq
2100 nt
NT seq
+upstream
nt +downstream
nt
atggcggcgatgatgaacccttacgatcccagatacacggatcccaactcctatagggag
agaagaagtggcctaatggcaccacagcaaacaatgtcaccctccatgatgggcggagta
ggtggtggcgctgaccctaatgtcgggagtggtggaccacttgcttacggaagatcacct
tcagctttcgttggcgggagggggggtggaggtgttggtgttcccggcgggccgggaccg
ggtagctttaacggatacccgcccttccaacctgacatcggcagagggtttgacattggc
cgaggtggtggaggaaggggcttcagtgcagggagaggtggtggaaggggcgggggtgga
gaacgtggcggtagattttctgttctagaccgcagcggccgaatgtctgatggagaccgt
ggtggcagtggtttcagaggaggcagggatgtaggacgcggacgtggtggtataaggggt
ggtcgtgacggtgggcgtcgtggtggtgggagctttggtggtagaggttttgattccggc
cgtggcggaggtagggcgagcagcggtcgtggcggaggtaggagttttgactccggccgt
ggtggcggtagaggtagagatggtggaaagtctagaggggagttgaacagcattcttctt
cctaagcaggattttggagacttggtaccctttgaaaagaatttttacgtggaaagccct
tccgtccaggcaatgacggagcaagaggttgcgctttaccgagcaaggcgtgagattacg
gtggaaggctacgatgtcccaaagccaatcagactatttcaagagacaaactttccagcg
tactgcctcgaggtgatggctaaattggggtttgttgaacccactcccattcaatctcaa
ggatggcctatggctttaaaaggcagagatttgatcggtattgcggagacgggttctggg
aaaacgttggcatatctgatgcctgcgttagtacatgtcagtgcgcagcgccggctgata
cgaggtgaaggacccatcgtgctggtcctagcacctacaagagaattggctgttcagata
caagaagaagttgccaaatttgggtcacgttccagtatgagaagtacttgcatatacggt
ggtgccccaaagggaccacagattcgcgatctccaagcaggggttgagattgtcattgca
acacccggtcgactgattgatatgttggaagctcagcatacaaacttacggagagtaaca
taccttgttttggatgaggctgaccgaatgttagacatggggtttgaaccgcagatcagg
aaaattgtatcgcaaattcggccagataggcagacactatattggagtgccacatggccc
agggaggtggaagcattggcaaggcagttcttacataatccctacaaggtgatcattgga
tctgtggatttgaaggccaatcattctatcaaccaggtagtcgaagttatgacggatatg
gagaagtataataggctgatcaaattactttcggaaatgatggatgggagtcggatcctt
atattcctggagacgaaaaaaggatgtgatcaggtcacacggcagctgaggatggatgga
tggccagctctatccatccatggtgataaaaaccaggccgaaagggactgggttctggct
gagttcaaaagtggcagaagtcctataatgactgccactgatgtagctgcacgtggtctt
gatgtgaaagacataaaatgtgtgatcaattacgatttcccatcgagccttgaagattat
gtccacagaattggacgaactggccgtgcaggtgctaaaggaactgcatttacctttttt
acgcatgcaaatgcgaagtttgtgagggatctaattaagatcctacaagaatctggccag
atcgtgagtcctgcattggctgccttagcccgttcaggtggttatggtgggggagggtca
ggtgggaacttccgctccagggggcgaggtggaggaggaggaggaggaggaggttttggt
aaccgagctttgatttcaggttccaataccatacctcttgggtcaaagaggccatggtag
DBGET
integrated database retrieval system
