Macadamia integrifolia (macadamia nut): 122079794
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Entry
122079794 CDS
T07436
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH9 isoform X1
KO
K13117
ATP-dependent RNA helicase DDX35 [EC:
5.6.2.6
]
Organism
ming
Macadamia integrifolia (macadamia nut)
Brite
KEGG Orthology (KO) [BR:
ming00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ming03041
]
122079794
Enzymes [BR:
ming01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
122079794
Spliceosome [BR:
ming03041
]
Complex C
Other components
Complex C specific factors
122079794
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_22
HA2_N
AAA_19
AAA_30
Cas3-like_C_2
AAA_23
ResIII
AAA_29
nSTAND3
TrwB_AAD_bind
AAA_16
T2SSE
AAA_7
SRP54
Motif
Other DBs
NCBI-GeneID:
122079794
NCBI-ProteinID:
XP_042502451
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All DBs
Position
5:complement(30861054..30987290)
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AA seq
696 aa
AA seq
DB search
MTQFWKPGSERPRLIDDEEGGVLFYASASSTSSGFGYSSIEKQRQRLPVFKYRTAILYLV
ETYGTTIIVGETGSGKTTQIPQFLKEAGWAEGGRMIACTQPRRLAVQAVASRVAEEMGVK
LGEEVGYTIRFEDLTDQNVTRIKFLTDGVLLREMMDDPLLTRYSVIMVDEAHERSISTDI
LLGLLKKIQRRRPELRLIIASATIEAKSMSDFFCNSKRRKGQGSNEHGPRPEPAILSVEG
RGYNVQVHYLEEPVSDYLQAAVSTVLLIHDQEPMGDILVFLTGQDDIDAAVQLLTEEVHN
QRKQSSRLIILPLYSGLPRAEQDLVFSPTPRGQRKVIISTNIAETSLTLEGIVYVVDCGF
SKQRFYNPISDIENLLVAPISKASARQRAGRAGRVRPGKCYRLYTEEYFVKEMPAEGIPE
MQRSNLVPCVIQLKALGIDNILGFDWPASPSPEAMVRALEVLYALGILDDDAKLTSPTGF
QVAEFPLDPMISKMILSANQLGCSEEIITIAAILSVQSIWVSIRGAHKELDEAKLRFAAA
EGDLVTYLNVYKGFLQAGKSSQWCHKNCINYQAMKKVIEIRGQLRRVAQRLGIVLKACDR
DTEVLRKAVTAGIFANACRLETFSQSGMYKTIRTSQEVYIHPSSVLFRVNPKWIVYHSLV
STDRHYLRNVTVIDPSWLIEAAPHFYQHQMINSVAQ
NT seq
2091 nt
NT seq
+upstream
nt +downstream
nt
atgactcagttctggaaacctggttccgagaggcctcgcctcatcgacgatgaagaaggc
ggagttctgttctacgcttctgcttcctccacctcctccggatttggttattctagcatt
gagaagcagagacagaggctcccagtatttaagtaccgtactgccattctctatctagtt
gagacttacggcaccaccattattgttggcgagactggtagtggtaaaaccactcagatt
cctcagttcctcaaagaagcaggttgggctgagggtggaagaatgatagcttgcacacag
ccaagacggttggctgttcaggctgttgcttcaagggtagctgaagagatgggtgttaag
ctaggagaggaagttgggtacactatacgttttgaagatcttacagatcaaaatgttacc
aggatcaagtttctcacagatggagtgctgcttagggaaatgatggatgaccctcttttg
accagatatagtgttataatggtagatgaggctcatgaaaggtccatttcgactgatatc
ttattgggtctcctgaaaaagatccaacgacgcagacccgagttgcgtctgataatcgcc
tctgctacaattgaggccaaatcaatgtctgatttcttctgcaacagcaagcgacgaaag
gggcaaggaagtaatgaacatggaccaagaccagagcctgctattctatcagttgaaggt
agagggtataatgtacaagttcattatcttgaagaacctgtttctgactatctgcaagcc
gctgtttcaactgtcttgttgattcacgatcaggaacctatgggcgatattctggtattc
ctcacaggtcaagatgatattgatgctgctgttcagttgctgacagaggaagttcacaat
caaagaaaacagtcctcaaggttgatcatcttgcctttgtactctgggcttccacgtgca
gagcaggaccttgtgttttctcccacacctagaggccagagaaaggttataatatcaact
aatattgctgagacatcattgacgttggaggggattgtttatgttgtggattgtgggttt
tcaaaacaacgcttctataatccgatttcagatattgaaaatttattagtggcaccaata
tcgaaggcatctgcccgacagagggctggtagagctgggagagtacgtcctgggaaatgt
tataggctgtatacagaagagtactttgtgaaggaaatgcctgctgaaggaattccagag
atgcagagatcaaatcttgttccttgtgtaattcaattaaaggccttaggcatagataat
attttaggctttgattggccagcaagtccgtctccagaagcaatggttagagcactggaa
gttctatatgcactcgggatccttgatgatgatgcgaagcttacttcacccactggattt
caagttgctgagtttccattagatccaatgatctcaaaaatgattttatctgcaaaccaa
ctgggatgttcagaggaaattatcaccattgcagcaattctgtctgttcagtctatctgg
gtttctattaggggagcacataaggagttggatgaagccaaactgcgatttgctgctgct
gagggtgatcttgtgacatacctgaatgtatataaagggtttcttcaggctggtaaatct
tctcagtggtgtcataaaaactgtatcaattatcaagcaatgaagaaggttattgaaatt
agagggcaactccgcagggtagcacaaaggctaggcatagtattaaaagcatgtgatagg
gacacagaggtactgaggaaggcagttactgctggaatttttgctaatgcatgtcgtttg
gaaacattcagtcagagtgggatgtataagactattaggacttctcaagaagtttatatc
catccatcatctgtgctgttcagggtaaatccgaagtggattgtctaccattctcttgtc
tccactgatcggcattatttgcgcaatgtaactgttattgatccttcatggttaatagag
gctgctcctcacttttatcagcaccagatgataaattctgttgctcagtga
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