Macadamia integrifolia (macadamia nut): 122079809
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Entry
122079809 CDS
T07436
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 20-like
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
ming
Macadamia integrifolia (macadamia nut)
Pathway
ming03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ming00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122079809
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ming03041
]
122079809
03009 Ribosome biogenesis [BR:
ming03009
]
122079809
Enzymes [BR:
ming01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
122079809
Spliceosome [BR:
ming03041
]
Complex A
U1 snRNP components
U1 related factors
122079809
Complex B
122079809
Ribosome biogenesis [BR:
ming03009
]
Eukaryotic type
Pre-60S particles
Helicases
122079809
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_30
Cas3-like_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
122079809
NCBI-ProteinID:
XP_042502472
LinkDB
All DBs
Position
5:complement(5170689..5184167)
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AA seq
568 aa
AA seq
DB search
MSYVPPHLRTSAIRSSTTSKTASETLDYDEKHSSSTPHYSLLQSKNNSSALSTLPNSIRR
TSSNLPPSRALPVPEPVFQQWKPSERVFRLKAEQIEEVRLRLNVDVTVASDSQPAAPAPA
PIESFTDMCLHPSIMKDIAFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIP
MIQHCLAQPPIRHGDGPLALVLAPTRELAQQIAKEVKAFSRSLESFRTAIVVGGTNIAEQ
RSELRAGVNIVVATPGRFIDHLQQGNTSLFRISFVVLDEADRMLDMGFEPQIREVMRSLP
KAHQTLLFSATMPVEIEALAQEYLTNPVQVKVGKVSSPTANVSQLLEKVSESEKIDRLLA
LLVDEASQTERSGHSQPLTIVFVERKTRCDEVTEALVAQGLHAVALHGGRSQSEREAALR
DFRSGATNILVATDVASRGLDVTGVAHVINLDLPKAMEDYVHRIGRTGRAGSTGQATSFY
TDRDMFLVAHIRKAIADVESGNAVAFATGKVARRKEREAAAAQREARDSLSKLSVLGPAS
INIEDKYRYMLTPTSMKKEGAADDAWDD
NT seq
1707 nt
NT seq
+upstream
nt +downstream
nt
atgtcttatgttccacctcacctgaggacatctgcaattcgaagctccacaacttccaaa
actgcatcggaaaccctagattatgatgagaagcattcttcttcgactcctcattactct
ctccttcagtccaagaacaactcctctgctctctccaccttacctaattccattcgtcgg
acctccagcaatctcccgccttccagagctctccccgtccctgaacctgtttttcaacag
tggaagccttcagagcgggttttccgtctcaaggccgaacagattgaagaggttcgcttg
cgattgaatgttgatgttactgttgcttcagattctcagcctgctgcacctgcacctgcg
ccaattgaatcatttactgatatgtgtttgcatccgagtatcatgaaggatattgctttt
catgagtacacgaggccaacttctattcaggcccaagcaatgccggttgctcttagtgga
agggacctattgggttgtgctgagactgggagtggcaaaactgctgctttcactattccc
atgattcagcattgcttggctcaacctcctattcggcatggtgatgggcctttggcctta
gtgttggctccaacaagagagctagcccagcagatagcaaaagaggttaaggcttttagt
agatctctggaatccttcagaactgctattgttgtgggtggaacaaacatagcagagcag
aggtccgagctacgagcaggtgtaaatattgtagttgccacacctggaagatttattgat
catttgcaacaaggaaatacctccctttttaggatttcatttgttgttttagatgaggct
gacagaatgctggacatgggttttgagccacagataagagaggtgatgcggagccttcca
aaagcgcatcaaactttgttgtttagtgcaaccatgcctgtggagattgaagcacttgca
caggagtatctaactaaccctgtccaagtaaaagtgggcaaagttagtagccctacagca
aatgtatctcaactattggagaaagtctctgaaagtgaaaagattgatcggcttctagct
ttgcttgtagatgaggcttctcagacagaaagatctggccattcacaacccctgaccatt
gtttttgttgagagaaagactaggtgtgatgaagtcacagaagctttggtagcacaaggt
ttgcatgctgttgctcttcatggtggccgtagccagagtgaaagggaggcagctcttcgt
gattttagatctggtgctaccaatattttggttgctactgatgttgcatctcgtggtttg
gatgtaacaggagttgctcatgttatcaatctagatcttccaaaggcaatggaggattat
gttcatcgaattggaaggacgggtcgtgctggatctacaggacaagctacatcgttttat
actgatcgtgacatgttccttgtggcacatataaggaaagcaattgcagatgtggaatct
ggaaatgctgtggcatttgcaacagggaaggttgcaagaaggaaagagagagaagctgct
gctgcacaaagagaagcaagggattcactatcgaagctctctgtgctgggtccagcatca
ataaacattgaggacaagtacaggtatatgctaaccccaacgagcatgaagaaggagggt
gctgctgatgatgcttgggacgactga
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