Macadamia integrifolia (macadamia nut): 122079964
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Entry
122079964 CDS
T07436
Name
(RefSeq) THO complex subunit 2-like isoform X1
KO
K12879
THO complex subunit 2
Organism
ming
Macadamia integrifolia (macadamia nut)
Pathway
ming03013
Nucleocytoplasmic transport
ming03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ming00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122079964
09122 Translation
03013 Nucleocytoplasmic transport
122079964
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ming03019
]
122079964
03041 Spliceosome [BR:
ming03041
]
122079964
Messenger RNA biogenesis [BR:
ming03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
122079964
Spliceosome [BR:
ming03041
]
Complex C
Other components
EJC/TREX
122079964
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
122079964
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Tho2
THOC2_N
Thoc2
TPR_MLP1_2
Motif
Other DBs
NCBI-GeneID:
122079964
NCBI-ProteinID:
XP_042502714
LinkDB
All DBs
Position
1:complement(12443319..12498725)
Genome browser
AA seq
1896 aa
AA seq
DB search
MSLPPIECKYVTEEFLREWKDGNSNFEMQTPVPVARFLYELCWTMVRGELPFQKCKAALD
SVEFADQVSNEEIGSNFADIVTQMAQDITMSGEHRGRLIKMAKWLVESAFVPLRLFQERC
EEEFLWEAEMIKIKAQDLKAKEVRVNTRLLYQQTKFNLLREESEGYAKLVTLLCQSGSEA
STHNVSAATISIIKSLIGHFDLDPNRVFDIVLECYELQPNNNIFLDLIPIFPKSHASQVL
GFKFQSYQRMEVNSPVPFGFYRLAAMLVKEEFIDLDSIYAHLLPMDDEAFENYDAFSAKR
FDEANKIGKINLAATGKDLMDDEKQGDVTIDLFAALDMESEAVKECSPEMENNQSLGLLS
GFLSVDDWYHAQMLFDRLSPLNPVAHVQICEGLFRMIEKSISSAYKVTCQAHFQSIGLPS
RSASDNMETSAPSIQKYFIDLPAELFQMLASAGPYLHRDAVLLQKVCRVLKRYYLSALEL
VADGGATQCGDGGSRDPRLRLKEARMRVEEALGTCLLPSLQLIPANPAVGQEIWEVLCLI
PYEVRYRLYGEWEKDDERIPMVLAAKQTAKLDTRRILKRLAKENLKQLGRMMAKLAHANP
MIVLRTIVHQIEAYRDMITPVVDAFKYLTQLEYDVLEYIVIERLVQGGREKLKDDGLNPS
DWLQSLASFWGHLCKKYPSMELRGLFQYLVNQLKKGQGIELVLLQELIQQMANVQYTENM
TEEQLDALAGSETLRCQATSFGMTRNNKALIKSTNRLRDALLPKEEPKLAIPLLLLIAQH
RSVVVINADAPYIKMVSEQFDRCHGTLLQYVEFLYSAITPAINYGQLVPSLDDIVHKYHL
EPEVAFLIYRPVMRLFKCSNGSNVYWPSDDIEELNTSIADQQSESSASSANLVLDLGAQN
PTKWSDLLETVRTILPSKAWNSLSPDLYATFWGLTLYDLYVPRNRYESEIAKQQAGLKAL
EELSDNSNSAIIKRKKDKERIQESLDRLTAELQRHEENVASVRRRLAREKDKWLSSCPDT
LKINMEFLQRCIFPRCIFGMPDAVYCAKFVHTLHSLGTPFFNTVNHIDVLICKTLQPMIC
CCTEYEAGRLGRFLCETLKMAYHWKSDESIYECECGNMPGFAVYYRYPNSQRVTYSQFIK
VHWKWSGRITRLLIQCLESTEYMEIRNALIVLTKISSVFPVTRKSGINLEKRVAKIKGDE
REDLKVLATGVAAALAARKSSWVSEEEFSMGHVDLKPTPSPATKSAAGNLVTGSNGSALN
ISQVETVGPRNTSAATQLPDSGNIIKEQILRTKPVDGRLEPAESVVFMKHDSGHVKLKGG
SLANGLDTQSIMHSGSGQGGSSRENETQKHIDEPAKGTLDVNAAKVGPKTAESELRPTVK
RAAAGSFSKQPKQEHAKDENKSVKSVSRIAGSSSTSDTDFSVHPSEVRQVVAANAAAATT
NGGTVPYSTKGSTASGKTSIDMHGTILKKESGSVKPSDLRASAGKDADENENSEIPRPFI
SRPAHSPIRDDASSATKSMEKQQKRPSPAEGQDRINKRRKGDGEGNDLEVDFRFSDRERS
GDVRLADKSHSSDVDKPGTDEKIPNRATDKLLDRPKDKGSERHDRDHRERLERPDKSRGD
EILAEKSRDRSIERHGRERSVERAQDRGADRNSDRIGDKGKDDRTKDDRSKPRYSETSSE
KSRADDRLRAQSLPPPPPLPPNVVPQSVNSNRRDEGADRRVSNIRHIQRLSPRHEEKERR
RSEENLLVSQDDAKRRREDDFRERKRDEQDGPSIKVEDRERDKINLLKDDMDVNGASKRR
KLKREHLSSGETGDYPLAVPPPPSLALGLSLSYHVRERDRKGAMAQRSGCLEEPLPRVHG
KEAASSKILRRDDQIYDREWEDEKRQRAEPKRRHRK
NT seq
5691 nt
NT seq
+upstream
nt +downstream
nt
atgtctctccctccaattgagtgtaaatatgtcacagaggagttcctccgggaatggaaa
gatgggaatagcaatttcgaaatgcagactccggtgccagtggctcggtttctgtatgag
ctctgttggactatggtacgaggagaattgcccttccagaagtgtaaagcagcgttggat
tcagttgagtttgctgatcaagtatccaatgaagagattggctcaaattttgccgatatc
gtgacccaaatggctcaagatattacaatgtctggggaacaccgcggccgcctcatcaaa
atggcgaaatggctagtggagtctgcctttgttcctttgcggcttttccaggagcgatgt
gaggaagaattcctgtgggaggctgaaatgatcaagataaaggctcaagatttaaaggcg
aaagaggtgagagtaaacactcgccttctatatcagcaaacaaaatttaaccttctccgg
gaagagagtgagggttatgccaaactggtcacacttctctgtcaaagtggttctgaagct
tcaactcataatgtgtcggctgcaactataagcataattaagtcattaattgggcacttt
gatctggacccaaatcgtgtctttgatattgttttggagtgttatgaacttcagcccaat
aacaatatattcttagacctgatacctatatttcctaagtcccatgcttctcaagtgctg
gggtttaaatttcaatcttatcagcggatggaagtgaatagtcctgtgccttttgggttt
tatcggcttgcagcaatgttggtgaaagaggagttcattgatcttgatagcatatatgca
catctgcttccgatggatgacgaggcatttgagaattatgatgcattttcagcaaagcgt
tttgatgaggctaacaaaattggaaaaataaatcttgccgctactgggaaggatctgatg
gatgatgaaaaacaaggggatgtgacaattgacctttttgctgccttggacatggaaagt
gaagctgttaaagaatgctcccctgagatggaaaataaccaaagtttgggtttgcttagt
ggattcctttcagtggatgactggtatcatgctcagatgctgtttgatcgtctctctcca
ctaaatcctgtggctcatgtacagatttgtgagggcttatttaggatgattgagaaatcg
atctcttcagcatacaaagtcacttgtcaggcacactttcagagtattgggttgccatcc
agatctgcttctgataacatggaaacgagtgcaccctcaattcagaaatattttattgat
cttcctgctgaactcttccaaatgcttgcttctgctggtccttatctccaccgtgatgct
gtactgctacagaaggtctgcagagtattaaaaagatattacctgtcagcattggagctt
gttgctgatggaggagctactcaatgtggtgatggggggagtcgagatcctcgcttgcgc
ttaaaggaagctcggatgagggttgaggaagccctaggtacatgtttacttccttcgttg
cagttgatacctgcaaatcctgccgttggacaagagatatgggaagtactgtgtctcatc
ccttacgaggtgcgttatcgtctgtatggtgaatgggaaaaagatgatgagcgaattcct
atggttttagctgcaaagcagacagcgaagttggatacaagaagaatcttaaaacggctt
gcaaaggaaaacttgaaacagctgggtcgaatgatggcgaaactagcacatgcaaatcca
atgatcgtacttagaacaattgttcaccagatagaggcttacagggatatgatcactcca
gttgtggatgcattcaaatatttgactcagcttgagtacgatgttttggaatacatagtg
atcgagcgtttggtgcaaggggggcgtgagaaactaaaagatgatggacttaatccatcg
gattggcttcaatctttggcttccttttggggccacttgtgtaagaagtatccctcgatg
gaactgaggggtctgttccagtatctcgtgaatcaattgaagaaggggcagggaattgag
cttgttcttttgcaggagcttatccaacaaatggcaaatgtccagtacaccgaaaacatg
acagaggagcagctggatgcattggcggggagcgagaccctacgatgtcaagctacatct
tttgggatgacaagaaataacaaggctctgatcaaatcgactaataggctgagggacgca
ttgcttccaaaggaggaacctaagttggccattcctttgctgttgcttatagcccaacat
cgctctgtggttgtcataaatgcagatgcaccatacattaagatggtcagtgaacagttt
gatagatgccatgggacccttcttcaatatgtggaattcctttatagtgcaataacacca
gctataaactatggtcagctggtcccctctcttgatgacattgtccacaaataccacctt
gaaccagaggttgcctttttaatataccgacctgtgatgaggctcttcaagtgttcaaat
ggttccaatgtctactggccttctgatgatattgaagagttgaacacatcaattgctgac
cagcagtctgaatcctcagcctcatctgctaatttggtcctggatcttggtgctcagaat
cctaccaagtggtctgatcttcttgaaacagttagaacaattttaccttcaaaagcttgg
aacagcctctcccctgatctctatgctactttttgggggctcacactctatgatctttat
gttcctcggaaccgatatgaatctgagattgctaagcagcaagctggtctgaaagcccta
gaagagctttctgataactcaaattcagctatcatcaaacgcaaaaaagacaaggaaaga
atccaggaatctctcgaccgtttgactgctgaactccaaaggcatgaagaaaatgttgca
tctgttcgtcgaagacttgcacgagaaaaggataaatggctgagttcctgccctgatact
ttgaaaattaatatggagtttcttcagcgctgtattttcccacgctgtatttttggcatg
ccagatgcagtctactgtgccaaatttgtacataccctacattctcttggaactcctttt
ttcaacactgttaatcatattgatgttctcatatgtaagaccttacaacctatgatctgc
tgctgcaccgaatatgaagccggtagactagggaggtttttgtgtgagacactaaaaatg
gcttaccattggaagagtgatgaatcaatttatgaatgtgagtgtggaaacatgccaggc
tttgctgtctattatagatatccaaacagccagcgtgtcacatatagccagtttattaag
gtacactggaaatggagtggacgaattacacgcttgctcattcagtgcttggaatcaact
gaatacatggaaatccgtaatgctcttatagtgttgacaaaaatttcgagtgtttttccc
gttactagaaagagcggaattaatcttgagaagcgggtagcaaaaattaaaggggacgag
agagaggatctcaaggtattggctacaggtgttgctgctgctttggctgctcgaaagagt
tcatgggtttctgaggaggaattcagcatggggcatgttgatctgaagccaactccatca
cctgccacaaagtctgcagctggtaatttagtaactggttccaatggttctgctcttaat
atttctcaagttgagacagttgggcctaggaatacctctgctgcaacccagcttccagac
tcgggaaatattatcaaggagcagatactgcggacaaaacctgtagatgggaggcttgag
ccagcagaaagtgttgtgtttatgaaacatgattctggacatgttaaattaaaaggtggc
tcattagcaaatggcttagatactcaatcaattatgcattcaggttctggacaaggtgga
tcatccagagaaaatgaaactcaaaagcatatagatgagcctgcaaaaggcaccttggat
gtaaacgcggcaaaagttggtcctaaaactgctgaatctgagttgagaccgacagtaaaa
cgggcggctgctggatctttctctaagcaacctaagcaggagcatgcaaaagatgaaaat
aaatcggtaaaatctgtcagcagaattgctggttcttcttccaccagtgacacagatttt
tccgtgcatccatctgaagttaggcaagttgttgctgccaatgcagctgcagctacaacc
aatggtggcactgttccatattccactaaaggttcaactgcatctgggaaaacgtccatt
gatatgcatggtaccatactaaaaaaagagagtggatctgttaagccttctgacttgagg
gcctctgctggaaaagatgcagatgaaaatgaaaattctgaaataccaaggcctttcata
tctcgacctgctcactctcccatccgtgatgatgcttccagcgcaacaaagtctatggag
aagcaacaaaagagacctagtccagccgaaggacaggacagaataaacaagcggaggaaa
ggtgatggagaagggaatgatttagaggtagattttcggttctctgacagggagaggtct
ggggatgtacgattagctgacaaatcccattcttctgatgttgacaagcctggaactgat
gaaaaaattcctaatagggctacagataagcttttggatagaccaaaagataagggcagt
gaaagacatgatagagaccatagggaaagattggaacgccctgataagtcacgtggagat
gagattttggcagaaaaatcaagggataggtcaatagaaagacatgggagagaacgttca
gttgaaagagcacaagacagaggagctgacaggaattctgataggataggtgacaaaggt
aaggatgacagaactaaagatgatcgtagtaaacctcgctatagtgagacatcttctgaa
aagtcccgtgctgatgatcgtcttcgtgcacaaagcttgccccctccaccacctctacct
cctaatgtagttccccaatctgttaattctaatcgaagagatgaaggtgctgacaggagg
gtcagtaatatcagacacattcagaggctctctcctagacatgaagaaaaagaacggaga
cgctcagaggaaaatttgttggtttcacaagatgatgcaaagcgtagaagagaagatgac
tttcgagagagaaaacgtgatgaacaggacggtccatcaatcaaggtggaggatagggag
agggacaaaattaacctcttgaaggatgacatggatgtaaatggagcatccaaaaggcga
aaacttaaaagggagcacctgtcgtcaggggaaactggtgattatccactggcagtccca
ccaccaccttctcttgcacttggtttgtcactgtcatatcatgtaagagaacgggacagg
aaaggggccatggcccagaggtcaggctgcttggaggaaccactgccaagggttcatggc
aaagaagccgctagcagcaagattctccgtcgggatgatcagatttatgacagagagtgg
gaggatgagaagaggcagagagctgaaccaaaacgaaggcatcgaaaataa
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integrated database retrieval system
