KEGG   Macadamia integrifolia (macadamia nut): 122080000
Entry
122080000         CDS       T07436                                 
Name
(RefSeq) U5 small nuclear ribonucleoprotein 40 kDa protein
  KO
K12857  Prp8 binding protein
Organism
ming  Macadamia integrifolia (macadamia nut)
Pathway
ming03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:ming00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    122080000
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:ming03041]
    122080000
Spliceosome [BR:ming03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U5 snRNP specific factors
    122080000
 Complex C
   U5 SnRNP specific factors
    122080000
SSDB
Motif
Pfam: WD40 WD40_Prp19 Beta-prop_TEP1_2nd WD40_CDC20-Fz Beta-prop_CAF1B_HIR1 WD40_WDHD1_1st Beta-prop_EML_2 WDR55 EIF3I Beta-prop_WDR75_1st WD40_MABP1-WDR62_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_TEP1_C Beta-prop_EML Beta-prop_EIPR1 Beta-prop_SPT8 WD40_MABP1-WDR62_1st Beta-prop_RIG_2nd Beta-prop_IFT122_1st ANAPC4_WD40 NBCH_WD40 Beta-prop_SCAP WDR90_beta-prop_4th Beta-prop_IFT140_1st WD40_RFWD3 Beta-prop_WDR35_TULP_N Beta-prop_DCAF4 eIF2A Beta-prop_WDR19_1st Beta-prop_WDR75_2nd Beta-prop_DCAF12 Beta-prop_HPS5 Beta-prop_RIG_1st Beta-prop_Nup120_160 Beta-prop_NWD2_C PEP5_VPS11_N Cytochrom_D1
Other DBs
NCBI-GeneID: 122080000
NCBI-ProteinID: XP_042502768
LinkDB
Position
5:10273181..10284778
AA seq 342 aa
MQVVHRGGENAMGASRPMEWSAVPYNAQAPGPIGKQRTSSLESPIMLLAGHQSAIYTMKF
NPAGTVIASGSHDKDIFLWNVHGDCKNFMVLRGHKNAVLDLQWTTDGTQIISASPDKTLR
AWDVETGKQIKKMAEHSSFVNSCCTTRRGPPLVVSGSDDGTAKLWDLRQRGAIQTFPDKY
QITAVSFSDASDKIFTGGIDNDVKVWDLRRNEVTMTLQGHTDMITGMQLSPDGSYLLTNG
MDCSLRIWDMRPYAPQDRCVKILTGNLHNMEKNLLKCSWSPDGRKVTAGSADRMVYIWDT
TTRNILYRLPGHNGSVNECVFHPHEPIIGSCSSDKQIFLGEI
NT seq 1029 nt   +upstreamnt  +downstreamnt
atgcaagttgttcatagaggaggtgagaatgctatgggggcttcaagaccaatggaatgg
tctgcagttccttacaatgctcaagcacctggaccaattggaaaacagcggacatcaagt
ctggaatcaccaattatgttgttagcaggtcaccagagtgctatatatacaatgaagttc
aatccagcagggacagtcattgcatcaggctctcatgacaaagacattttcctttggaac
gttcatggggattgcaaaaacttcatggtcttgagagggcataagaatgcagtcttggat
cttcaatggactactgatggcacccagattatatcagccagtcctgataagactttaaga
gcatgggatgttgaaacagggaaacagataaaaaagatggcagaacattcatcctttgtg
aattcctgctgcacaacccgtcgaggtcctccccttgttgttagtgggtctgatgatggt
actgcaaagctgtgggatctgcgtcaaagaggagcaatacagacatttccagacaaatac
cagatcacagctgttagtttctctgatgcatctgataagatattcactggtgggatagac
aatgatgtgaaggtttgggatctacgtaggaatgaggttaccatgactcttcagggtcat
acggatatgataacaggtatgcagttgagtcctgatggctcctatctcctaaccaatggc
atggattgttctcttcgcatttgggatatgcgcccatatgctccacaggaccgttgtgtc
aagatattaacagggaatctgcacaacatggaaaagaacctgttgaaatgtagctggtcc
cctgatggaaggaaggtcactgctggtagtgcagaccggatggtatatatttgggataca
actactcgaaacatcttgtataggctccctggccacaatggatctgtaaatgagtgtgtc
ttccatccccatgaacccatcattggatcttgcagtagtgataaacagatctttcttggt
gagatctga

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