Macadamia integrifolia (macadamia nut): 122080143
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Entry
122080143 CDS
T07436
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB2-like isoform X1
KO
K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:
2.7.7.6
]
Organism
ming
Macadamia integrifolia (macadamia nut)
Pathway
ming03020
RNA polymerase
ming03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ming00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
122080143
09124 Replication and repair
03420 Nucleotide excision repair
122080143
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ming03021
]
122080143
03400 DNA repair and recombination proteins [BR:
ming03400
]
122080143
Enzymes [BR:
ming01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
122080143
Transcription machinery [BR:
ming03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
122080143
DNA repair and recombination proteins [BR:
ming03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
122080143
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_3
RNA_pol_Rpb2_4
RNA_pol_Rpb2_5
Motif
Other DBs
NCBI-GeneID:
122080143
NCBI-ProteinID:
XP_042502978
LinkDB
All DBs
Position
5:41224597..41235509
Genome browser
AA seq
1095 aa
AA seq
DB search
MMTESDGETATLFPKAARLRNLTYSAHLYVDVTKQIIKKGHDCEEVTETQEFTKVFIGKV
PLMLRSSYCTLYQCSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKNRQ
PNKYAYVAEVRSMAESQNRPPRSLFVRMLSRASAKGGSSGQYIRATLPCIRKEIPIIIVF
RALGFVADKDILKLICYDFSDTKMMELLLPSLEEAFVIQNQQVALDYIGKRGTEVGVTRK
KRIKYAKDILQKEMLPHVSVQEYCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRL
DLAGPLFGGLFRLLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNW
GQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGHEGKLAKPRQLHNSHWGMMCPAET
PEGQACGLVKNLALMVYITVGSAPNSVLEFLEEWSTENLEEISPAVIPQTTKIFVNGCWV
GIHRDPESLVKTLRGLRRKADVNTEVGIIRDICLKELRIYTDYGRCSRPLFIVDKQRLLI
KKKDVRALQQRESSDEGGWHDLVEKGFIEYIDTEEEETTMISMTVNDLITARLHPEEAYS
KTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYV
LYYPQKPLVTTRAMEHVHFRQLPAGINSIVAISCYSGYNQEDSVIMNQSSIDRGFFRSLF
FRSYSDEEKKMGTLVREDFERPNRENTMGMQHGSYDKLDNDGLAPPGTRVSGEDVIIGKT
TPIAQDESQGQASSYTRRDHSTSLKHSESGMVDQVLLTTNGDGLRFVKVRMRSVRVPQIG
DKFSSRHGQKGTVGMTYTQEDMPWTVEGISPDIIVNPHAIPSRMTIGQLIECIMGKVAAH
MGKEGDATPFTDVTVDNISKALHKCGYQMCGFETMYNGYTGRRLTEMIFLGPTYYQRLKH
MVDDKIHSRGRGPMQILTRQPAEGRSRAGGLRFGEMERDCMIAHGAAHFLKERLFYQSDA
YRVHVCERCGLIAFANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMSMAIAPRLCT
SELKTIKDNKKVALN
NT seq
3288 nt
NT seq
+upstream
nt +downstream
nt
atgatgacggagtctgatggagaaacggctactttgtttcccaaggctgcaaggttgagg
aacctcacctattcggcacacttgtatgtggatgtcacaaagcaaatcataaagaaaggg
cacgattgtgaagaagtaactgagacgcaggagttcactaaagtcttcattggaaaggtt
cctctaatgctccggtcgagttattgtacattatatcagtgttcagagaaggatctaaca
gagcttggggagtgcccatatgatcagggtggatactttattattaatggaagtgaaaag
gttctgattgcacaggagaagatgagcacgaatcatgtgtacgtgtttaagaataggcag
cctaacaagtatgcctatgtggctgaggtacgttcaatggcggaatctcagaacaggcca
cccagaagtttgtttgtgcgtatgctttctcgggctagtgccaaagggggttcctctgga
cagtacattcgtgctacccttccgtgtatccgaaaagaaatcccaataattattgtcttt
agggcactagggtttgttgctgataaagatatattaaagctcatatgctatgacttctct
gacactaagatgatggagttacttctaccatccttagaagaagcatttgtgatccagaat
caacaggttgcgttggattacattgggaaaagaggtactgaagtgggtgtcacaaggaaa
aagaggattaagtatgctaaagatatccttcagaaagaaatgcttcctcatgttagtgtt
caagaatattgtgaaacaaagaaggcttactatttcgggtacatcattcacaggcttcta
ctatgtgcacttggtcgaagggcagaagatgatagggatcattatggaaacaagaggcta
gaccttgctggacctttgtttggaggccttttccgcttgctgttcagaaagttgacaagg
gacgttagagcgtatgttcagaagtgtgttgataatgggaaggatgttaacttgcaattt
gctataaaagcgaaaacaatcactagtggccttaagtattccctcgctacagggaactgg
ggacaggcaaatgctgctggtacaagagctggagtttcacaggttttgaaccgtttgaca
tatgcatctaccctgtctcacttgcgaaggttaaactctcctattgggcatgaagggaaa
ttggcgaaaccaaggcagttgcacaattcccattgggggatgatgtgtcctgcagaaact
ccagaagggcaggcttgcggacttgtgaagaatttggcgctaatggtgtacattactgtg
ggatcagcaccgaattccgtacttgagtttttggaagagtggagtacagaaaatttagag
gaaatatcccctgctgttattccgcaaacaaccaaaatttttgtcaatggttgctgggtt
ggcattcatcgtgatcccgagtctttggtgaagacattgagaggtctgagaagaaaggct
gatgtcaatactgaagttggtattatccgagatatttgtttgaaagagcttcgaatttat
actgattatggccgttgtagccgtcccttgtttattgttgataaacaaaggctacttata
aagaaaaaagatgtccgggccttgcaacaaagggaatcctcagatgagggcggctggcat
gatcttgtggaaaaaggattcatagagtatatagacacagaagaagaagagactaccatg
atttccatgactgttaacgatcttataactgcaaggctccatcctgaggaggcttattcc
aaaacttatactcattgcgaaatacatccatcattgattttgggtgtctgtgcatctatt
attccgtttcctgaccataaccagtcccctcgtaatacgtaccagtcagcaatgggaaaa
caggccatggggatatatgtcacaaattaccaattgcgaatggatacactggcctatgtg
ctctattacccccagaaacctcttgtaactactcgtgccatggagcacgtgcacttcagg
cagttgccagctggcatcaattctatcgttgctatctcctgctattccggatataaccaa
gaagattctgttatcatgaaccaatcttcaattgaccggggattcttccgatcattgttc
ttccggtcatatagcgatgaggaaaagaagatgggaacattagttagggaggattttgag
cgtccaaacagggaaaatacaatggggatgcaacatggatcttatgataaattagataat
gatggtcttgcccctcctggcacaagggtctcaggtgaagatgttattattggaaagaca
actcctattgctcaggatgaatctcaagggcaagcttcaagttacacacgccgtgatcat
agcacaagtctaaagcatagtgaaagtgggatggtagatcaggttctgttgacaacaaat
ggtgatggtttgaggtttgtgaaagtaagaatgaggtccgtccgtgtacctcagattggg
gacaagttcagcagtcgacatggtcagaagggaacagttggtatgacatacacgcaagaa
gacatgccgtggactgtggaaggaatttccccagatattattgtgaacccacatgctatt
ccttctcgaatgacaattggccagctcatagaatgcattatgggaaaggttgcagcccac
atggggaaggagggggatgcaactccttttactgatgtcacagtggacaatatcagcaaa
gccctccacaaatgtgggtatcagatgtgtggttttgagaccatgtacaatggttataca
ggccggaggctaactgagatgatattcctgggtccaacgtactatcagaggctgaagcac
atggtggatgataagatccattcacgtgggcgtggtcccatgcagattctcacaaggcag
cctgctgaaggacggtctcgagcaggtggtctccgatttggagagatggagagagattgt
atgattgctcatggggccgcacactttctcaaagagcggttgttttaccagagtgatgct
tatagagttcatgtttgtgagcgttgcgggctgattgcttttgccaacctaaagaagaac
tcgtttgaatgtagaggttgcaagaacaagactgacattgtccaggtccacataccttat
gcatgtaagttgcttttccaagagctcatgtcgatggccattgccccgaggttatgcaca
agtgaactgaagacaatcaaagataataagaaagtggctttgaactga
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