KEGG   Macadamia integrifolia (macadamia nut): 122081405
Entry
122081405         CDS       T07436                                 
Name
(RefSeq) replication factor C subunit 2
  KO
K10755  replication factor C subunit 2/4
Organism
ming  Macadamia integrifolia (macadamia nut)
Pathway
ming03030  DNA replication
ming03410  Base excision repair
ming03420  Nucleotide excision repair
ming03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:ming00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    122081405
   03410 Base excision repair
    122081405
   03420 Nucleotide excision repair
    122081405
   03430 Mismatch repair
    122081405
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:ming03032]
    122081405
   03036 Chromosome and associated proteins [BR:ming03036]
    122081405
   03400 DNA repair and recombination proteins [BR:ming03400]
    122081405
DNA replication proteins [BR:ming03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    122081405
  DNA Replication Termination Factors
   ELG1-RFC complex
    122081405
Chromosome and associated proteins [BR:ming03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    122081405
DNA repair and recombination proteins [BR:ming03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     122081405
  Check point factors
   HRAD17(Rad24)-RFC complex
    122081405
SSDB
Motif
Pfam: Rep_fac_C AAA DNA_pol3_delta2 AAA_14 AAA_22 nSTAND_NTPase5 RuvB_N Mg_chelatase Rad17 AAA_16 Viral_helicase1 AAA_lid_RFC1 AAA_11 AAA_5 nSTAND3 RCF1-5-like_lid AAA_19 AAA_assoc_2 AAA_3 MeaB AAA_28 AAA_18 AAA_30 AAA_25 AAA_24 DNA_pol3_gamma3 NTPase_1 ABC_tran AAA_7 RNA_helicase bpMoxR DNAX_ATPase_lid NPHP3_N SLFN-g3_helicase MipZ DO-GTPase1 KTI12
Other DBs
NCBI-GeneID: 122081405
NCBI-ProteinID: XP_042504459
LinkDB
Position
6:32642004..32646583
AA seq 334 aa
MAASSSSSTSGSSYDVPWVEKYRPNKVADIVGNQDCVSRLQVIARGGNMPHLILSGPPGT
GKTTSILALAHELLGANCKEAVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKVIIL
DEADSMTSGAQQALRRTMEIYSNSTRFALACNMSSKIIEPIQSRCALVRYSRLSDQEILG
RVMIVVEAEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNPENVFKVCDQPHP
LHVKNLVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFLKET
GFAHMRICDGVGSLLQLSGLLAKLALVRETAKAT
NT seq 1005 nt   +upstreamnt  +downstreamnt
atggcagcttcttcttcttcttcaacatcaggaagcagctacgatgtcccatgggtggag
aagtacagacccaacaaagtagccgacattgttgggaaccaagattgcgtctcgaggctt
caagtcatcgccagaggtggcaacatgccccatctcatcttgtccggtcctccaggaact
ggaaaaacaacaagtattttggcccttgcgcacgagctactgggagcaaactgcaaggag
gctgtgctagagctcaatgcatctgatgacaggggaattgatgtcgttagaaacaaaatt
aagatgtttgcccaaaagaaagtaactcttccccctggaaagcacaaagtaatcatttta
gacgaggcagacagtatgacatcgggagcacaacaagctttgaggcggacaatggaaatt
tattcaaattccacgcgttttgctcttgcatgtaatatgtcttctaagataattgagccc
attcagagtagatgtgcccttgttcgctattctagattgtcagaccaagagattcttggc
cgtgttatgatagtcgttgaagctgagaaggttccatatgttccagaaggccttgaagca
attattttcactgctgatggtgatatgaggcaggctttgaataacttgcaggccacatac
agtggttttcggtttgtcaatccggaaaatgtgttcaaggtgtgtgatcagcctcacccc
ttacatgtgaagaatttggtccgcaatgtacttgaggggaaatttgatgatgcctgttct
ggtctgaagcagctctatgacttgggttattccccaaccgacataatcacaaccctcttc
cggataatcaagaactatgatatggctgagtatctgaaactggaattccttaaggaaact
ggatttgcacacatgagaatctgcgatggagttggctcacttcttcaactatctggtctc
ctagctaagcttgctctagttcgggaaacagccaaagctacataa

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