Macadamia integrifolia (macadamia nut): 122081408
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Entry
122081408 CDS
T07436
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH3-like isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
ming
Macadamia integrifolia (macadamia nut)
Pathway
ming03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ming00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
122081408
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ming03019
]
122081408
03012 Translation factors [BR:
ming03012
]
122081408
Enzymes [BR:
ming01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
122081408
Messenger RNA biogenesis [BR:
ming03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
122081408
Translation factors [BR:
ming03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
122081408
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
dsrm
DEAD
HA2_N
AAA_22
nSTAND3
NACHT
ATPase
Dicer_dimer
ABC_tran
AAA_19
T2SSE
AAA_23
PhoH
Motif
Other DBs
NCBI-GeneID:
122081408
NCBI-ProteinID:
XP_042504462
LinkDB
All DBs
Position
6:complement(1055661..1089877)
Genome browser
AA seq
1209 aa
AA seq
DB search
MPNSAFLRGYLRNGAYLIMTLRPKALQLPFYSYPRSPKTLKTTTVYGAMKDRAQAYSTVY
APPRLRSVIISSASYDVSNRSPDFDWRHRQGLVYSPKDSSYPYLQPQQNFQYGRYAYDDY
SDDDCDREIESSSQVSAATLDNIDDWNWKLTMLIRNKDEQEVVSRERKDRRDFEQLVALA
SRMGLYSRQYDKVVVFSKVPLPNYRPDLDDKRPKREVTISFGLQGRVDAQLREYLYRKPM
KRKTFPNAAFSRTSSSGSIATDEGFFEQPESQIPNSVVLEKILRRRSLQLRNQQQAWKES
PEGQKMLEFRRSLPAFKERDDLLTAISQNQVVVISGETGCGKTTQLPQYILESEIDAARG
ATCNIICTQPRRISAMSVSERVAAERGDKLGGSVGYKVRLEGMKGRDTRLLFCTTGILLR
RLLVDRNLKGVSHVIVDEIHERGMNEDFLLIVLKDLLPRLPELRLILMSATLNAELFSSY
FGGAPMLHIPGFTYPVRAHFLENVLEMTGYRLTPYNQIDDYGQDKMWKMQKQALRKRKSQ
IASVVEDALEAADLKEYSPRTRESLSCWNPDSIGFNLIENVLSHICRKERPGAILVFMTG
WDDINALKEQLQAHPFLGDPSRVLLLACHGCMPSSDQRLIFEKPEDGVRKIVLATNMAET
SITINDVVFVVDCGKAKETSYDALNNTPCLLPSWISKAAVRQRRGRAGRVQPGECYHLYP
RCVYDAFADYQLPELLRTPLQSLCLQIKSLQLGSISEFLSRALQSPELLSVQNAIEYLKI
IGALDENENLTILGRHLSMHPVEPKLGKMLIYGAIFNCLDPILTVVAGLSVRDPFLTPFD
KKELAEAARAQFSARDYSDHLALVRAYEGWRDAEREQSGYEYCWKNFLSAQTLKAIDSLR
RQFFSLLKDTGLIDDNTDNCNAWSHDEHLIRAVICAGLFPGICSVVNKEKSISLKTMEDG
QVLLYSNTANARESKIPYPWLVFNEKVKVNSVFLRDSTAVSDSLVLLFGGNISSGGLDGH
LKMLGGYLEFFMKPVLADTYLNLKRELDELIQNKLLNPKMDIRIHEELLSAVRLLITEDQ
CEGRFVYGRQAPKPSKIASLSTPQMSSRSFYGPGGDNSKSQLQTLLTRAGHEAPTYKTKQ
LKNNQFRTTVEFNGMQFVGQPCQNKKLAEKDAAAEALQWLTGGTRSSQEDIDNKSLLLKK
SKNKHHWRM
NT seq
3630 nt
NT seq
+upstream
nt +downstream
nt
atgcccaactccgctttcttgcggggttacctcagaaatggcgcttacttgatcatgact
ctgagaccaaaagctttgcaattaccgttctattcgtatcctcgaagccctaaaacgttg
aaaactactacagtctacggagctatgaaggatcgagctcaagcgtacagcactgtatac
gctcccccacggttgaggtccgtcatcatttcctccgcttcctatgacgtctccaatcgt
tctccagacttcgattggcggcacagacagggtctcgtctatagccccaaggacagttct
tacccttacttgcagccgcagcagaactttcagtatggtcggtacgcttacgatgattac
tcagacgatgactgtgaccgggaaattgagtcgtcgtcgcaagtgagtgctgctacactt
gataacattgatgactggaactggaagttaaccatgcttattcgcaacaaagatgaacaa
gaggtggtttcaagggagaggaaggaccgacgtgattttgagcaacttgtggcattggct
agcagaatgggtttatatagccgtcaatatgataaggtggttgtctttagcaaggtcccg
ttgccaaactacagacctgacctagatgataagcggccaaagagggaggtgactatatcc
tttggtttacaaggaagagtggatgctcaacttagagagtacctttatcgaaagcccatg
aaaaggaaaacttttccaaatgcagccttttcaagaacaagcagcagtggcagtattgca
acagatgaagggttttttgagcaaccagagtcccagatacccaatagtgtcgtcttggag
aaaatccttagacggagaagcttgcaacttcgtaatcagcaacaagcttggaaggaatca
ccagagggacaaaaaatgttagagtttcgtcgaagtctccctgcctttaaagaaagggat
gacttattaacggccatctcacagaatcaggtggttgtcatctcaggagaaactggctgt
ggtaagacgacacagcttcctcaatacattttggaatctgaaatagatgctgcccgtgga
gctacctgtaacattatttgtactcagcctagacgaatatctgctatgagtgtttctgaa
agagttgctgcagaaagaggggataaattgggaggatctgtcggttacaaagttcggttg
gagggtatgaaaggaagggatacgcgcctgcttttttgcaccactggtatcctgttaaga
aggttattggttgatagaaatttgaaaggtgtaagtcatgtaatcgtggatgagattcat
gagcgtggaatgaatgaagattttctgcttattgttctgaaagatcttctccctcgtttg
cctgaattgagattgattttgatgagtgcaaccttgaatgctgagctattctcttcctac
tttggtggggctccaatgttacacataccgggtttcacttacccagttcgagctcatttt
ctggagaatgttcttgaaatgactgggtatagattgactccatataaccaaatagatgat
tatggacaagacaaaatgtggaagatgcagaaacaagctctcagaaagaggaagagccaa
attgcttctgttgttgaggatgcacttgaagctgctgatcttaaggaatacagcccacgg
acccgggagtctttgtcttgttggaatcctgattctataggctttaacctcatagaaaat
gttctatcacacatttgtagaaaagagagacctggtgctatcctggtattcatgactggg
tgggatgacataaatgctctgaaggagcaactccaagctcatccttttttgggagatcca
agcagagttctattgcttgcttgccacggttgcatgcccagctcagaccagaggttaata
ttcgagaagcctgaagacggtgtgaggaaaatagtgcttgctaccaacatggctgagaca
agtatcaccattaatgatgtggtttttgttgttgattgtggaaaagcgaaagagacgtca
tatgatgcgttgaataacacaccttgtttgctgccttcgtggatttctaaagctgctgtt
cgacaaagaagaggaagggctggtcgtgttcaacctggagagtgttaccatctttatccc
agatgtgtgtatgatgcttttgcagattatcaattgccagaactcttacgaacacctttg
caatcactttgtctgcaaatcaaaagcttacaacttggaagcatttcagagttcctttct
agggctttgcagtctccagaactattatcggttcaaaatgctattgagtatttgaaaatc
attggggctctagatgagaatgagaatctgactatcctgggacggcacttgtcaatgcat
ccggtggaacccaagcttggaaagatgcttatatatggggctatattcaactgcttagat
ccgatactaactgttgttgctggtcttagcgtgagggatccatttttaacgccgtttgac
aaaaaggagcttgcagaggctgcacgagcccagttttctgctcgggattacagtgaccat
cttgctcttgttcgagcctatgagggttggagagatgctgaaagagagcaatctggatat
gaatactgctggaagaatttcctctctgcacagacactaaaagctattgattcccttagg
aggcagttcttttctttgctcaaagatactggtcttattgacgacaacacagacaattgt
aatgcatggagccatgatgagcacctcatccgagcagtcatctgtgcgggtttgtttcct
gggatttgttcagttgtgaacaaggaaaaatctatatcattgaagacaatggaggatggt
caggtccttctatactcgaacacagccaatgctcgggaatcaaaaattccatacccatgg
ctagttttcaatgagaaggtgaaagtaaactcagttttcttacgagattcaacggctgta
tcagattcactggttctcttattcgggggaaacatctctagtgggggactcgatggacac
ctgaaaatgttgggaggctacttggagttcttcatgaaacctgttttagctgatacatat
ctaaacctgaagagagagcttgacgaactaattcaaaataaacttctgaatcccaaaatg
gacattcgcatccatgaggaactgttatcagcagtgcggttactgatcacagaggaccaa
tgtgaaggaaggtttgtctatggccgtcaagccccaaagccatcaaaaattgcatcattg
tcaacaccacagatgtcttcaaggagtttctatgggcctggaggtgataattccaagagc
cagctgcagacattgttaacccgggctggacatgaagcacccacttataagacaaaacaa
cttaagaacaaccaatttcgaaccactgtggagtttaacgggatgcagtttgtggggcag
ccttgtcagaacaagaagcttgcagagaaggatgctgcagctgaggctttgcaatggttg
acaggtgggactcgatcgagtcaagaagacattgacaataagtcattgctgctgaaaaaa
agcaagaacaaacatcactggagaatgtaa
DBGET
integrated database retrieval system
