Macadamia integrifolia (macadamia nut): 122081465
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Entry
122081465 CDS
T07436
Name
(RefSeq) polyadenylation and cleavage factor homolog 4-like
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
ming
Macadamia integrifolia (macadamia nut)
Pathway
ming03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ming00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
122081465
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ming03021
]
122081465
03019 Messenger RNA biogenesis [BR:
ming03019
]
122081465
Transcription machinery [BR:
ming03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
122081465
Messenger RNA biogenesis [BR:
ming03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
122081465
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf_PCFS4
CID
Motif
Other DBs
NCBI-GeneID:
122081465
NCBI-ProteinID:
XP_042504545
LinkDB
All DBs
Position
6:complement(2373996..2393598)
Genome browser
AA seq
1066 aa
AA seq
DB search
MEMESSRRSIDRSREPGFKKPRLSEEVERDRGLKGVVDRDRSFQQRVSTVGSGPGAGSLL
SRFRTNEKDGNAERDESVRGVYPQRQHQELVSQYKTALAELTFNSKPIITNLTIIAGENV
HAAKGIAATICANIIEVPSEQKLPSLYLLDSIVKNIGRDYIKYFAAKLPEVFCKAYKQVD
SSIHSGMRHLFGTWKGVFPPVTLQIIEKELGFSPAMNGSSSGAPVSRPDSQSQRPPHSIH
VNPKYLEARQRLQQSNRNSQRPQREVLSEPVQENTGEAYGDYEYGSDLSRHPDMGTGSGS
DRLSERGLDKTYGVGSSTVDSVVGQRNGSGAQHRFSKYQASRPAQAAAQLPLTLSTAKKS
SRGMYRNWKNSEEEEYIWDDMNFRLMDHGARDSSRRDGWTSDDSEKLEEEHLPQPRSEHD
IGSRVNRETSLDSKSITQRGQAAFGYRTSPTWSLQEPHLLDNTHTSQTSMVSAGSDSRSG
TSLTRAGLRSQMVPSSVSAGVLGQQRHLPPGSASPSRQSHIPQHPHSPSSSLHQRQPSHD
LSEQDRLQEQSFDQPALKPSQLAGSLSCVPQESFNIPVNQLGTTQNLQLNQSPPPQHLRT
PSPLIAFPQLKPHAPFSQQQPQADKLLSQFSGQSQKPLHQGPNFGSLTTGSSVLSHSNCS
AADQIGESNASSLLSAILEKGLLSNNLASGGFPNLNFQESGSLPSSMNIQPPLPSGPPPV
LHAASSIPMVSEASLLATVSHGNASTISALPQRTTVRPPLPPGPPPPSSIGGSTTVQMSS
VTSGAPNSLSSLLSSLVAKGLISSSTTESSTVPATQMLSQNQSHSTGPITSSSMSVSSSP
DAAIIPSSYGNELPFTESCPKSTTSLSQGTTSESNSKGLIGIEFKPEIIREPHPSVISGL
FDDVPYHCKICGLGIRLEERLNKHMEWHASKKSEQSSCNLVSRRWFANLGDWIAGKEGHF
SAPTSAASIEISVDALDESEHAVLADESQCVCLLCGELFEDFYNFERDEWMFKGAVYMTL
PAGDGNGGTTGGSAVQGPIVHANCISQSNVHDLGWTERVKLEQADG
NT seq
3201 nt
NT seq
+upstream
nt +downstream
nt
atggaaatggagagttctcgtagatccattgataggtcgagagaaccaggttttaagaaa
cctaggttgtctgaagaggtcgaacgagatcgtggtttgaagggcgttgtcgatcgtgat
cgatcatttcagcagagggtttctaccgttggaagcggccccggagctgggtccttacta
tcgaggtttagaacgaacgagaaggacgggaatgcggagagagatgagtctgttcgagga
gtttatccgcaacggcagcatcaagagcttgtcagtcagtataagacggctcttgcagaa
ctgaccttcaattccaagcctatcatcactaacctgactattatcgcgggggagaacgtc
catgctgccaagggaatcgcagccactatctgcgcgaatattattgaggtacccagtgag
caaaagctgccatctctttaccttttagatagtatcgtaaagaacattgggagagattac
atcaaatacttcgctgccaaactacctgaggtgttctgcaaggcctataaacaggttgat
tcttcaattcattctggtatgcggcatctttttgggacttggaaaggtgtatttccccct
gtcactcttcagataatagagaaagaacttggattctcccctgccatgaatggttcatct
tctggtgctccagtatccaggcctgattcacaatcacaacgcccaccacatagcattcac
gtgaatcctaagtatttagaggcaaggcagcgccttcaacagtcaaacaggaactctcag
cgtccccaaagggaagtgttaagtgagcctgttcaagagaacactggtgaggcatatgga
gattatgaatatggttcggatctttcgaggcatccggacatgggaacagggagtggcagt
gataggcttagtgagaggggacttgacaagacgtatggagtgggaagcagtactgtggac
tcagttgttggccaaagaaatgggtctggtgcacagcatagattttcaaaataccaagca
tcgagacctgctcaagctgctgctcagcttccgttaacactgagcactgcaaagaaaagt
agcagagggatgtataggaactggaaaaattctgaggaagaagagtacatttgggatgat
atgaacttcagattgatggatcacggggcccgtgatagctcaaggagagatggttggact
tcagatgattcagaaaagctggaggaagaacaccttccacaacctcggagtgaacatgat
attgggtctagggttaatagagaaacttccttggattcaaaatccattacacaaagagga
caagcagcatttgggtatcgaacatcaccgacatggtcattacaagagccacacctctta
gataatacccatacaagccaaacttcaatggtttcagctggttcagattctcggagtggt
acatctttgaccagggccggtcttcgttcccagatggttccatcatcggtatctgctgga
gttttagggcagcaacggcatcttcctccaggttctgcatccccatccagacagtctcac
attccccagcatcctcattcaccttcatcttcacttcatcagcgtcaaccatcacatgat
ttgtctgagcaagaccgtctgcaagaacaatcctttgatcagcctgctttaaaaccatct
cagcttgcaggatcattgagttgtgtgccacaagagtctttcaacatccccgttaatcag
cttggaactactcaaaatttgcagttaaatcaatcaccacctccccaacatttacgaaca
ccttctcctttaatcgcttttcctcaactaaagcctcatgctcctttctcacagcagcag
ccacaggcagataaattactgtctcaattttctggtcagtcccagaagccactgcatcaa
ggcccaaattttggatctctaacaacagggtcttctgtgctgagccattcaaattgttct
gcagcagatcaaattggagaatctaatgctagtagtttattaagtgcaattttggaaaag
ggattactttcaaacaacttagctagtggtggtttccccaaccttaacttccaggagtcg
ggttcgttgccaagtagtatgaatatacagccccctctgccaagtggacctccccctgtc
ctccatgctgcatcctcaattcccatggtttcggaagcttctttattggctacggtatcc
catgggaatgcatcaactatatcagcactccctcagaggacaactgtgcggcctcctctg
cctcctggacctcctcctccttcatctattggaggtagcacaacagtgcagatgtcaagt
gtaactagtggtgctcctaattctctttcaagtcttttgagttcattagttgccaaggga
ttaatatcttcttcaacaacagagtcatcaactgttcctgctacccagatgctgagtcaa
aaccaaagccatagcactggcccaattaccagtagttccatgtcagtttcctcaagtcca
gatgctgcgatcatcccttcatcttatggtaatgaacttccttttacagaatcttgcccg
aagagcacaactagcttgtctcaaggcaccacaagtgaatccaattccaagggcctcata
ggtattgagttcaagccagagattatccgagaaccacatccctcagttatcagtggcctc
tttgatgacgttccatatcactgcaagatctgtggtcttggaattagacttgaggaaaga
ctcaataaacatatggagtggcatgcttcaaagaaatctgaacaaagtagttgcaacttg
gtttcaaggagatggtttgcaaatttgggtgactggattgctgggaaagaagggcacttt
tctgcgcctacatctgctgcttcaattgaaatttcagttgatgcattggatgagagtgaa
catgcagtccttgctgatgaaagccaatgtgtgtgtttattatgtggggagctgttcgag
gatttttacaattttgaaagagatgaatggatgttcaaaggagcagtttatatgaccctc
ccagctggggatggcaatgggggaactactggtgggagtgctgtccagggtcccattgtg
catgcaaactgtatttcacaaagtaatgttcatgacttgggatggactgagcgcgttaaa
ttggaacaggcagatggatga
DBGET
integrated database retrieval system
