Macadamia integrifolia (macadamia nut): 122081650
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Entry
122081650 CDS
T07436
Name
(RefSeq) poly(A)-specific ribonuclease PARN-like
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
ming
Macadamia integrifolia (macadamia nut)
Pathway
ming03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ming00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
122081650
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ming03019
]
122081650
Enzymes [BR:
ming01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
122081650
Messenger RNA biogenesis [BR:
ming03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
122081650
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
RRM_PARN_C
Motif
Other DBs
NCBI-GeneID:
122081650
NCBI-ProteinID:
XP_042504772
LinkDB
All DBs
Position
6:complement(3065040..3072101)
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AA seq
538 aa
AA seq
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MPLVPPPSIWLLRPPEILRSAKPPLPIGQNTFVVLESLSENLEVPSLPVNIGDGNVRSHP
IGNHASEGISYLSRVQESSAKERIGSPISRIHPVKSSLTPSVADSVFLERTRSRVRHWMN
ACKDPIPTKGTDDALVKSLRKLILGEMYGSRPCMSIDVCSERQVELVLEMLIEFSDLIPL
IIPDKSGGPGAVRVVLTSSEEDKKLLERELENLEEEENKRVRGFREVIDAISVSQKPIVA
YNCLTEFTFIHSKFLASLPQSMSEFMCSLRFAFPCILDVNYLLKEIGPLKKAKNLPAAMS
YLKRQFFMPLDMELPHQGFSEQEHERMNHGHNVLRITQSFAKLCLILKVTPGTNQTVNDD
LDNSLESYSNNFNPFCTSLQESIDAEGIVWMDNTRKVSTEDLAFVWGFRSGMSAAVLKSI
FRGSHDVFSEDFEVRLVDKSCAIVVFWTPGSVEVLLNVLGSGAVGSGGLKEMISEGLRGA
GYELYKRICRLGLWESNLAESLDRALEEPIPDVLGADSTKDLSEIYWSNDSVIKLEDL
NT seq
1617 nt
NT seq
+upstream
nt +downstream
nt
atgcccctcgtcccaccaccgtcaatctggctgctgcggccaccggagatccttaggtcc
gccaagccccccttacctattgggcaaaacacgtttgtcgtgctggagagcctctctgaa
aacctcgaagtcccatcgcttcctgtcaatattggtgacggcaacgtccgaagtcatccc
attggcaaccatgcttcagagggtatatcatacttatccagagtacaagaatccagtgcg
aaagagagaattgggagtcctatttctaggatccatccggtgaaatcttctttgacccca
tctgttgctgattcagtgttcttggaaaggactagatcacgagttaggcattggatgaat
gcatgtaaagatccaattccaacgaagggaactgatgatgctcttgtcaaatcactgagg
aagcttatcttaggtgaaatgtatgggtcaagaccatgcatgagtatagatgtttgcagt
gaacgtcaagtggagctggtgctggagatgttgattgagttctctgatcttatacctcta
attatcccagacaaaagtgggggacccggggcagtacgagtagtactgacaagttctgaa
gaggacaagaaacttcttgagagggagcttgaaaatcttgaagaggaggaaaacaagcga
gttcgtggctttcgagaggtgatcgatgcaatatcagtgtcccagaagcctattgttgcc
tacaactgtcttactgaatttacattcattcattcaaaattccttgcttctctgcctcag
agcatgagtgagttcatgtgctccttgcgctttgcttttccatgcatccttgatgtcaac
tatttgttgaaggaaattggtcctctgaaaaaggcaaaaaacttgccagctgcgatgtcc
tacttgaagagacaattctttatgccccttgacatggaacttccacaccaaggtttctca
gagcaggaacatgaaaggatgaaccatgggcataatgttctaagaataacacagtcgttt
gccaaactctgcttgatactgaaagtaactcctggtactaaccaaacagtgaatgatgat
ctggataattccttggaaagctattcaaataatttcaatcccttctgtaccagtctccaa
gaatcaattgatgcagaaggtattgtgtggatggataatacgagaaaagtgagcactgaa
gacctagctttcgtgtggggattcagaagtgggatgtctgctgcagtattgaaaagcata
ttccgtggatcccatgatgtgttctctgaagattttgaggttcggttagtggacaaaagt
tgtgctattgtagttttctggacacctggttcagttgaggtcttacttaatgtgctgggt
tctggggcggttggttctggtggtctgaaggaaatgatttcagaaggtcttagaggagct
ggctatgagttatataagagaatctgcagattaggtttatgggaatcaaatttagctgaa
tcattggacagagccttggaagagcctatccctgatgtactgggagccgattccacaaaa
gatttgtcagagatatactggagcaatgattctgtgattaaacttgaagatctttga
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