Macadamia integrifolia (macadamia nut): 122082313
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Entry
122082313 CDS
T07436
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH3-like
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
ming
Macadamia integrifolia (macadamia nut)
Pathway
ming03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ming00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
122082313
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ming03019
]
122082313
03012 Translation factors [BR:
ming03012
]
122082313
Enzymes [BR:
ming01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
122082313
Messenger RNA biogenesis [BR:
ming03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
122082313
Translation factors [BR:
ming03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
122082313
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
dsrm
HA2_N
AAA_22
nSTAND3
AAA_19
NACHT
T2SSE
Dicer_dimer
ATPase
AAA_16
ABC_tran
AAA_23
AAA_11
Motif
Other DBs
NCBI-GeneID:
122082313
NCBI-ProteinID:
XP_042505713
LinkDB
All DBs
Position
6:complement(446085..461422)
Genome browser
AA seq
1215 aa
AA seq
DB search
MPYSAFVRGYLRTGPYLTMSLRPTALQFPSRSILRSPKTSKTSTTVFGAMKDRALAYGTV
YVPPRLRSVITSSANSGVSTRSLDFDWRDNQGLVYSPRGGSYPSLQPQQQQQQQQQQQSF
QYGRFAYDSYSDDDSEREIESSSQQVGASTRDNIDEWNWKLTMLIRNKDEQEVVSRERKD
RRDFEQLAALASRMGLHSRQYEKVVVFSKLPLPNYRSDLDAKRPQREVTISFGLQRRVDA
QLREYLSQKPMSRETFSRSSSSGSLAADEGFFGQPESQMRTSVVMEKILRRRSLQLCNQQ
QAWQESPEGQKMLEFRQSLPAYKERDALLSVVSQNQVVVISGETGCGKTTQLPQYILESE
IEATRGASCSIICTQPRRISAMSVSERVAQERGEKLGESVGYKVRLEGVKGRDTRLLFCT
TGILLRRLLVDRNLKGVTHVIVDEIHERGMNEDFLLIVLKELLPRRPELRLILMSATLNA
ELFSSYFGGAPMVHIPGFTYPVRAHFLENILEMTGYRLTPYNQIDDYGQGKMWKMQKQAL
RKRKSQIASVVEDALEAADFKEHSLRTQESVCCWNPDSIGFNLIENVLCHICKKERSGAI
LVFMTGWDDINALKEQLQTHPLLGDASRVLLLACHGSMPSSEQRLIFEKPDDGVRKIVLA
TNMAETSITINDVVFVVDCGKAKETSYDALNNTPCLLPSWISKAAARQRRGRAGRVQPGE
CYHLYPRCVYDAFADYQLPELLRTPLQSLCLQIKSLQLGSISEFLSRALQSPELLSVQNA
VEYLKIIGALDENENLTILGRHLSMLPVEPKLGKMIIYGAMFNCLDPILTVVAGLSARDP
FLMPFDRKELAESARAQFSARDYSDHLALVRAYEGWRGAEREQSGYEYCWKNFLSAQTLK
AIDSLRRQFFSLLKDTGLVDDNTDSCNAWSHDKHLVRAVICAGLFPGICSVVNKEKSISL
KTMEDGQVLLYSNTANAQESKIPYPWLVFNEKVKVNSVFLRDSTAVSDSVVLLFGGNISR
GGLDGHLKMLGGDLEFFMKPALADTYLNLKRELDELIQNKLLNPKMQSHAHEELLSAVRS
LISEDRCEGRFVFGRQVSKPSKIAAISPPRKFSQSGGGPGGDNSKSQLQTLLTRAGHEAP
TYKTRPLKNNQFRTTVEFNGMQFLGQPCQNKKLAEKDAAAEALKWLTGGNQSNRQEIDNM
SMLLKKSKKKHHRRT
NT seq
3648 nt
NT seq
+upstream
nt +downstream
nt
atgccctactccgctttcgtgcggggttatctcaggaccggtccttacctgaccatgtct
ctgagaccaactgctttgcaatttccatctcgttcgattcttaggagccccaaaacctcc
aaaacctctacaacagtcttcggcgccatgaaggatcgggcactagcgtacggcactgtt
tacgttccaccacgcttgaggtctgtcatcacttcctccgctaactccggcgtctccacc
cgttctctggactttgattggcgggacaatcagggtctcgtctatagccccaggggaggt
tcttacccttccttgcagccgcaacagcagcagcagcagcagcagcagcagcagagcttt
cagtatggtcggtttgcttacgattcttactcagatgatgactccgagcgtgaaattgag
tcttcgtcgcagcaagtgggtgcttcgacgcgtgataacattgatgagtggaactggaag
ttaaccatgcttattcgcaacaaagatgaacaagaggtggtgtcaagggagagaaaggac
cgacgtgattttgagcaacttgcggcattggctagcagaatgggtttacatagccgtcaa
tatgaaaaggttgttgtctttagcaagctcccactgccaaactacagatctgacctagat
gctaagcggccacaaagagaggtgactatatcttttggtttgcaacgaagagtggatgct
caacttagagaatacctttcccaaaagcctatgagtagggaaactttttcaagatcaagc
agcagtggcagtcttgcagctgatgaagggttttttgggcaaccggagtcccaaatgcga
actagtgtcgtcatggagaaaatccttagacggagaagcttgcaactttgtaatcagcaa
caagcttggcaggaatctccagagggccaaaaaatgttagagtttcgccaaagtctccct
gcttataaagaaagggatgccttattatcagtcgtctcacagaatcaggttgttgtcatc
tcaggtgaaactgggtgtggtaagacgactcagcttcctcaatacattttggaatctgaa
atagaagctacccgtggagcttcctgtagcattatttgtactcagcctagacgaatatct
gctatgagtgtttctgaaagagttgctcaagaaagaggggagaaattgggagaatctgtt
ggctataaagtacggctagagggggtaaaaggaagggatactcgcctgctcttctgcacc
acagggatcctgttgagaagattgttggttgatagaaatttgaaaggtgtaactcatgtt
atcgtagatgagattcatgagcgtggaatgaatgaagattttctgcttattgtcctgaaa
gaacttctccctcgccggccggaattgagattgattttgatgagtgctacgctgaatgct
gagcttttctcatcctattttggtggggctccaatggtacacataccaggttttacatac
ccggttcgagcccattttctggagaatattcttgaaatgactgggtataggttgactcca
tataaccaaatcgacgattatggacaaggaaagatgtggaagatgcagaaacaagctctc
agaaagaggaagagccaaattgcttctgttgttgaggatgcacttgaagctgctgatttt
aaggagcatagcctacggactcaggagtctgtgtgttgttggaatcctgattctataggc
tttaacctcatagaaaatgttctgtgccatatttgtaaaaaagagagatctggtgctatt
ttggtatttatgactgggtgggatgacataaatgctctgaaggagcaacttcaaactcat
cctcttttgggagatgccagcagagttctgttgcttgcttgccatggttccatgcccagc
tcagagcagaggttaatattcgagaagcctgatgatggtgtgaggaaaatagtgcttgct
accaacatggctgagacaagtatcaccattaatgatgtggtttttgttgttgattgcgga
aaggcaaaagagacatcatatgatgcattgaataacacaccttgtttgctgccttcatgg
atttctaaagccgctgctcgacagagaagaggaagagctggccgtgttcaacctggcgag
tgttaccatctttatcccagatgtgtatatgatgcttttgcagattatcaattgccagaa
ctcttaagaacacctttgcaatccctttgtctgcaaatcaaaagtttacaacttggaagc
atttcagagttcctttctagggctttgcagtcgccagaactactatctgtccaaaatgct
gttgagtatttgaaaatcattggggctttggatgaaaatgagaatctgacaatcctagga
cggcacttgtcaatgcttccggtggaacccaagctcggaaagatgattatatatggggct
atgttcaactgcctggatccgatattgactgttgttgctggtcttagtgccagggatccg
tttttaatgccatttgacagaaaggagcttgcagagtctgcaagagcccagttttctgct
cgggattacagtgaccatcttgctcttgttcgagcctacgagggatggagaggtgctgaa
agagagcaatctggatatgagtactgctggaagaattttctatctgcacagacgctaaaa
gctatcgattcccttaggaggcagttcttttctttgctcaaggataccggtctggttgat
gacaacacagacagctgtaatgcatggagccatgataagcacctcgtccgagcagtcatc
tgtgcgggtctgtttcctgggatttgttcagttgtgaacaaggaaaaatcaatatcattg
aagacaatggaggatggtcaggttcttctgtactcgaacacggccaatgctcaggaatcc
aaaattccgtacccctggctagttttcaatgagaaggtgaaagtgaactcagttttcctc
cgggattcgacagctgtatctgattctgtggttcttctctttgggggaaacatttctaga
gggggactcgatggacacctgaaaatgttgggaggagacttggagttcttcatgaaacct
gcgttagctgatacatatcttaacttgaagagagagcttgatgaactaattcaaaataaa
cttctgaatcccaagatgcagagtcatgcccatgaggagctcctgtcagctgtgcggtca
ctgatctcagaggaccgatgcgaaggaagatttgtcttcggccgccaggtctcgaaacct
tcaaagattgctgcaatttcaccgccacggaagttttcacagagtggcggtgggcctgga
ggtgataattccaagagccagctgcagacattgttaacccgggctggacatgaagcacca
acttacaaaacaagaccactaaagaacaaccagttccgaactactgtggagtttaatgga
atgcagtttttgggtcagccttgtcagaacaagaagcttgcagagaaggatgctgcagct
gaggcgttgaaatggttgacaggtgggaaccaatcaaatcgacaagaaattgacaatatg
tcgatgctgctgaagaaaagcaagaagaagcatcacaggagaacttaa
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