Macadamia integrifolia (macadamia nut): 122082537
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Entry
122082537 CDS
T07436
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit E-like
KO
K07466
replication factor A1
Organism
ming
Macadamia integrifolia (macadamia nut)
Pathway
ming03030
DNA replication
ming03420
Nucleotide excision repair
ming03430
Mismatch repair
ming03440
Homologous recombination
ming03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
ming00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
122082537
03420 Nucleotide excision repair
122082537
03430 Mismatch repair
122082537
03440 Homologous recombination
122082537
03460 Fanconi anemia pathway
122082537
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ming03000
]
122082537
03032 DNA replication proteins [BR:
ming03032
]
122082537
03400 DNA repair and recombination proteins [BR:
ming03400
]
122082537
Transcription factors [BR:
ming03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
122082537
DNA replication proteins [BR:
ming03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
122082537
DNA repair and recombination proteins [BR:
ming03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
122082537
MMR (mismatch excision repair)
122082537
DSBR (double strand breaks repair)
HR (homologous recombination)
122082537
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
Rep-A_N
REPA_OB_2
tRNA_anti-codon
zf-CCHC
Fer4_9
CDC24_OB3
DUF223
zf-CCHC_5
Motif
Other DBs
NCBI-GeneID:
122082537
NCBI-ProteinID:
XP_042506103
LinkDB
All DBs
Position
6:5305862..5314136
Genome browser
AA seq
891 aa
AA seq
DB search
MAINLTGGAIAMLCNGEAQETDLKPVLQVTDIRLVNTQQQSTNERYRILLSDGSHLQQGM
LATQMNFLVKSGKLQKGSIVRLTQFVCNVIQGRMIIIIIDLEVLLENCNPIGEPKQYAQG
GATGGPPVPVARPAVSVQPPVNQSGVPAGNAQLYGGGSLASDQLGGQNVAGGAPPHVPKA
DPVPSYGSSYSGNPISGRYSALQGTRMYPKTEVGSGHPESAPSPGSYNEQNQSFRNAQVE
GSRVTMNTYSRPMHPSNQHPPPMYTNRGPIAKNEAPTRIIPIAALNPYQGRWTIKARVTA
KGDLRHYNNPRGDGKVFSFDLLDSDGGEIRVTCFNAVADQFYNQIDAGKVYLISKGSLRP
AQKNFNHLNNDHEILLESTSTVQPCFEDDNSIPKQQFHFRPISDVEGLQSNAIVDVIGVV
SSINPSTSIMRKNGTETSRRSLHLKDMSGRSVELTLWGNFCNAEGQRLQDMRDSGEFPVL
AVKAGRINDFNGKAVGTIGTSQLFIDPDFAEARRLKDWFYNEGKNTPSISISRETSGVGR
TDVRKTVSQIKDEKLGTSEKPDWITVSVTVTFIKVDNFCYTACPIMIGDRQCSKKVINNG
DGKWRCDRCDQCVDECDYRYILQMQIQDHSGLTWVTAFQESGEEIMGVSAKELYYLKHEQ
QDDEKVAEIIRKVLFTRFIFKLKVKEETFSEEQRVKSTVVKAERVNFSSESSFLLASIEK
LQGGDISAFVQRAATNLPDSAMGHAGYGGMGVGSAAPPAVNYLGSSNNVGRDMGLLANQV
GQYGNQYSSVRGTAGSTGVYLHCNSCGGTGHTAQNCPSVSIQGQPMGGGFVNRASSGGAS
NGGTSGECYKCHQVGHWARDCPGTIGINSAYGSSSIAGRYGGVPKQQVGGF
NT seq
2676 nt
NT seq
+upstream
nt +downstream
nt
atggcgattaatctgacgggaggtgccatagctatgctctgtaacggtgaggctcaggaa
actgacttgaagcctgttctccaagttacggacatcagattagtgaacacacaacagcag
agcaccaacgaacggtatcggatactgctttcagatggttcacatctgcaacaagggatg
cttgcgacgcagatgaattttctggttaaatcggggaagttgcagaaaggatcgattgtc
aggcttacccagtttgtctgcaacgtcatccagggccggatgattattattatcattgat
ttggaagtgcttcttgaaaattgcaatcctattggagagccaaagcaatatgctcaaggt
ggtgctactggcggtcctcctgttccagtggcaaggcctgctgtttctgtccagcctcct
gtgaatcagtctggggtaccagcagggaatgctcaattgtatgggggtggttcacttgcc
agtgatcaactaggtggacaaaatgtagctggtggagctcctccgcatgtaccaaaagct
gaccctgtgccatcttatggcagttcgtattctggaaatcctatctcaggaaggtattct
gcacttcagggaactcgtatgtatcccaaaacagaagttggttctggccatcctgaatca
gcaccatcacctgggagttacaatgaacagaaccaaagttttcgcaatgcccaagtagaa
ggatcacgggttactatgaatacatactcccgtcctatgcatccttcaaatcagcatcca
cctccaatgtacacaaacagaggacctattgctaagaatgaagctccaactcgtataatc
cctattgctgctttaaatccttaccaaggtaggtggacaattaaagccagggtgacagcc
aagggggacctccggcactataataatcctcggggtgatggaaaggtcttctcttttgat
ctgcttgattctgatggtggagaaatacgggtaacctgctttaatgcagtggctgatcag
ttctacaaccagattgacgctgggaaagtgtacttgatttccaagggaagcttgagacct
gctcaaaagaatttcaatcacctaaataatgaccatgaaatcctcctggaaagcacctca
actgtacagccctgcttcgaagatgacaactcaatacctaaacagcaattccatttccgc
cccataagtgatgtggaaggcctgcagagcaatgcgattgtggatgttattggagtagtt
tcttccatcaatccctccacttcaataatgaggaaaaatggaactgagacatccagaaga
agcctccatctaaaggacatgtctggtcgaagtgttgagttaactctgtgggggaatttc
tgcaatgcagaagggcagagattgcaagatatgcgtgattcaggggaatttcctgttttg
gccgtgaaagctggtagaatcaatgacttcaatgggaaggcagtggggacaattggtacg
tcccagttgttcatcgatccggactttgcagaagcccgcaggttaaaggattggttttat
aacgagggaaagaacacaccctctatttctatttcaagggaaacatcaggagttgggagg
actgatgtccgtaagactgtgtcccagatcaaggatgagaagctaggaacatctgagaag
ccagattggatcaccgtcagtgtcacagttacgttcattaaggttgataacttctgctac
acagcctgtcccatcatgattggtgaccgtcagtgtagcaagaaggttattaacaatgga
gatgggaaatggaggtgtgataggtgtgatcagtgtgttgatgaatgtgattatagatac
attctccagatgcagatacaggatcattcaggtttaacctgggttactgcattccaggaa
tctggcgaggagatcatgggtgtatctgcaaaggagttgtattatttaaaacatgaacaa
caagatgatgaaaaagttgctgagattatacgtaaggttctatttactcggttcatattc
aagttgaaagtgaaagaggagacattcagtgaggaacaacgagttaagtcgactgtggtc
aaagctgagagggttaatttttcatctgagtccagctttcttctagcttcgattgagaag
cttcaaggaggggatattagtgcttttgtccagagagcagctaccaatcttcctgattct
gcaatgggtcatgctggatatgggggcatgggagtcgggtctgccgcacctcctgcagtg
aattacttggggagtagcaataatgttggtagagatatgggtctactggcaaatcaggtt
ggtcagtatggaaaccaatacagtagtgtgaggggtacagctgggtcaacgggggtgtat
ctacactgcaacagctgtggtggcacaggccacactgctcagaactgccctagtgtgagc
attcagggacaaccaatgggaggaggttttgtcaatagggcctcttccggtggagcaagc
aacggtggtacctctggggagtgctacaaatgccatcaagttggacactgggcaagagat
tgtcctggaacaattggcataaattcggcatatggaagcagtagtattgctgggagatat
ggaggtgttccgaaacaacaggtgggaggcttttga
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