Macadamia integrifolia (macadamia nut): 122082743
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Entry
122082743 CDS
T07436
Name
(RefSeq) pre-mRNA-processing protein 40A-like isoform X1
KO
K12821
pre-mRNA-processing factor 40
Organism
ming
Macadamia integrifolia (macadamia nut)
Pathway
ming03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ming00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122082743
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ming03041
]
122082743
Spliceosome [BR:
ming03041
]
Complex A
U1 snRNP components
U1 related factors
122082743
Complex B
122082743
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FF
WW
FF_RHG35_4th
WW_TCERG1
Motif
Other DBs
NCBI-GeneID:
122082743
NCBI-ProteinID:
XP_042506425
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All DBs
Position
6:40053122..40082423
Genome browser
AA seq
1055 aa
AA seq
DB search
MANNPQSSATPPLRPPPIVGSAGPPQNFAPPMSMQFRPMMSVQQQGQMYMPAGSQQFRPV
GQGIPTSNVGMPPSAQGQQLQYSQPIQQLPPRPGQPGHSMLTSSQTVQMPYPQPNMPSFS
SGSPQPQQNAQPMANPMGVPGSMGMPLLPSYTFTTSYGQPQSNVNHSNQYQPISQMHAPN
IPTSAGGQSWLSSASQCVPLVTPIQQATQQQPVVTSASVLATNSQPNSSQQSSSDWQEHT
SADGRRYYYNKKTRVSSWEKPLELMTPVERADASTVWKEFTTQEGRKYYYNKVTKLSKWT
IPDELRLAREQAEKAASQGLQSDTTVTPDSSSAVAVTLVDTPSSVGISIGSSSTVAISGV
ASSPVPVTPVVSISPPPVVTSGMPAIVAIPSAVASNAVGVPSPAAALSPLQSTVSGGAVV
PVALDNATTTTTNFENVSQGVATSIDGASAQDLEEAKKGMAVAGKTNVTPLEEKTVDEEP
LVYANKQEAKNAFKALLESANVEYDWTWEQAMRVIINDKRYGALKSLGERKQAFNEYLGQ
RKKQEAEERRIRQKRAREEFTKMLEESKELTSSTRWSKAISMFEDDERFKAVERARDRED
LFENYLVELEKKERAKAQEEHKRNIMEYRQFLESCDFIKANSQWRKVQDRLEDDERCSRL
EKIDRLEIFQEYLRDLEKEDEEHRKIEKEQQRRAERKNRDEFRKLMEEHVAEGMLAAKTH
WRDYFMKVKELPAFIAVSKNTSGSTPKDLFEDVVEELENQYHDDKTRIKDGMKLEKINMA
SSWTFEDFKASIIEVVGSPTISDINLKLVYEELIERIKEKEEKEAKKRQHLADDFTDILH
SIKEITASSKWEDSKSLFEDSQEYRAIGEENFRREVFEEYVTHLQEKAKEKERKREEEKA
KKEKEREEKEKRKDKERKEKERERERDKVKERSKKDEMESENVDVTGNYVSKEEKKREKD
KDRKHRKRHHSAADDVSSDKDEKEESKKSRRHSSDRKKSRKHAYSPESDGGSRHKRHKRD
HRDSSRRNGGYEELEDGELGEDGEIRSRGHTKNDD
NT seq
3168 nt
NT seq
+upstream
nt +downstream
nt
atggcgaataaccctcaatcttctgccacaccgccacttcggccaccgcctattgtcgga
tccgctggtcctcctcaaaattttgctccacccatgtctatgcaattccgtcctatgatg
tcagtgcagcaacaagggcaaatgtatatgccggcgggttcgcaacaatttaggcctgtt
gggcaaggtattcctacttcaaatgttgggatgccaccttccgctcaaggtcagcagctt
cagtattctcaaccaattcagcagttgcctccgaggcctgggcagcctggtcacagtatg
cttacttcatcacagacggttcagatgccctatccgcagccaaacatgccttctttttca
tctgggtcaccacagcctcagcaaaacgcacagcctatggctaatcctatgggagtacct
ggtagcatgggaatgccacttttgccatcatatacttttactacatcttatggccagcca
caaagcaatgttaatcactcgaatcagtaccagccaatttctcagatgcatgcacctaac
ataccaactagtgctgggggacaatcttggctgtcttctgcaagccagtgtgtgcccctt
gttacaccgattcagcaagccactcaacaacagcctgtggtaacatctgcctctgttctg
gcaacaaattctcaacctaactccagtcaacagtcttcatcagattggcaagaacataca
tctgctgatgggagaagatattattacaacaagaagacaagagtgtctagttgggagaag
cctttagaattaatgacacctgttgagagggcagatgcgtccactgtctggaaggaattt
acaactcaagagggcaggaagtattactacaacaaggtcactaagttatcaaaatggaca
atccctgatgaactgaggttggctcgggaacaggctgaaaaggctgctagtcagggtcta
cagtctgacactactgtgactcctgactcctcatctgctgttgctgtcaccttagttgat
acaccatcttctgtggggatttcaattggctcttcctcaactgttgcaatttcaggggtg
gcatcaagcccagttccagtgacacctgttgtttctataagcccaccccctgttgtgacg
tctggaatgcctgctattgttgctattccttctgctgttgcatcaaatgcagttggggtt
ccctctcctgcagcagctctttctcccttacaatctactgtttcagggggtgctgtggtt
cccgttgctttggacaatgccactactacaacgaccaactttgagaatgtatctcaaggt
gttgcaacttctattgatggggcttctgctcaggatttggaggaagccaaaaagggcatg
gcggttgctggcaagaccaatgttactccactagaggagaaaactgttgatgaagaaccg
ttggtttatgctaataagcaggaggcaaagaatgctttcaaagctctcttggaatctgca
aatgttgagtatgactggacttgggaacaggctatgagagtgataattaatgacaaaaga
tatggtgctctgaaatcacttggggagcgaaagcaagcttttaatgagtacctgggccaa
aggaaaaagcaggaggctgaggagagacgcattagacagaagagagcaagggaggaattc
acaaaaatgttagaagaatcaaaagagctcacatcatcaacaagatggagcaaagctata
agcatgtttgaggatgatgagcggttcaaggctgtggagcgagccagggaccgtgaggat
ctttttgaaaactatctggtggaactggagaaaaaggaacgtgcaaaagctcaggaggag
cataagcgtaatataatggagtacaggcaatttctggaatcctgtgactttattaaggca
aacagtcaatggaggaaagttcaagatcgcctggaggatgatgaaagatgttctcgtctt
gaaaagatagatcgcttggaaatcttccaggaatatttacgtgacttagaaaaggaagat
gaggagcataggaagattgagaaggagcaacagagacgggctgagagaaaaaatcgtgat
gagttccgtaagttgatggaagaacatgttgccgaagggatgcttgcagctaaaactcat
tggcgtgactattttatgaaggttaaagaattgcctgcgtttatagcagtatcaaaaaac
acctctggttctacaccaaaagatctgtttgaggatgttgtcgaggaattagagaaccag
tatcatgacgacaagactcgaataaaggacggaatgaagttagaaaagataaatatggca
tcatcatggacttttgaagactttaaggcttctattattgaggttgttggctctcccacc
atatcagatatcaacttaaagcttgtatacgaggagttaatcgaaaggattaaggagaag
gaggaaaaggaagccaaaaagcgtcaacacttggcagatgatttcactgatatattacac
tctatcaaggaaataactgcatcgtcgaaatgggaggactccaaatcactttttgaagat
agtcaagagtatagagcaattggggaagagaacttcagaagggaggtctttgaggagtat
gtcacacatttgcaagaaaaggcaaaagagaaagagcgcaagagagaggaagaaaaggcg
aaaaaagaaaaagagagagaggagaaagagaagaggaaggataaagagagaaaggaaaaa
gagagagaacgtgaaagggacaaggtaaaggaaagatccaagaaggacgaaatggagagt
gaaaatgttgatgtaactggcaattatgtctccaaagaagaaaaaaagagggagaaagac
aaggacaggaaacaccggaagcggcatcatagtgcagcagatgatgttagctctgataag
gatgagaaagaagagtctaaaaagtcgcgtaggcatagcagtgacaggaaaaaatcgagg
aagcatgcatactctcctgaatcagatggtggaagcaggcacaagagacataagagagat
cacagggatagttcccgtagaaatggtggttatgaggagcttgaagatggggagcttgga
gaggatggggaaatccgatcacgtggacacaccaaaaacgatgattaa
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