Macadamia integrifolia (macadamia nut): 122083373
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Entry
122083373 CDS
T07436
Name
(RefSeq) tetratricopeptide repeat protein SKI3
KO
K12600
superkiller protein 3
Organism
ming
Macadamia integrifolia (macadamia nut)
Pathway
ming03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ming00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
122083373
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ming03019
]
122083373
Messenger RNA biogenesis [BR:
ming03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
122083373
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TPR_2
TPR_1
TPR_11
TPR_16
TPR_17
TPR_8
TPR_14
TPR_CcmH_CycH
TPR_12
CFAP70_TPR_C
TPR_19
TPR_9
TPR_7
BTAD
TPR_NPHP3
Motif
Other DBs
NCBI-GeneID:
122083373
NCBI-ProteinID:
XP_042507077
LinkDB
All DBs
Position
7:complement(31839315..31857640)
Genome browser
AA seq
1181 aa
AA seq
DB search
MGDKEDEARLKQLQETVDSDPNNPSHHYNLGLFLWEKVDESKEFKEKAVEHFVISAKLNP
NNGSAFRFLGHYYSRVSVDSQRASKCYQRAVTLNPDDFEAGEDLCDLLDDEGKESLEIVV
CREASEKSPRAFWAFRRLGYLQVHQKKWSEAVQSLQHAIRGYPTCADLWEALGLAYQRLG
MLTAAIKSYGRAIELEDSRVFALVESGNILLMLGSFRKGIEQLRQALDISPHNVAALYGL
ASGLLGLSKECVHSGAFGWGTSLLEEASEIVKTSIPLAGNNACSWKLHGDIQLTYAKCFP
WMEEGFSLETDEAFRNSILSWKRKCLSAAIAASRSYQRSLHLAPWQANIYTDIAISLDLI
CSLEERSKPEPDAWQLPEKMSLGGLLLEGDNNDFWVALGCLSNNNALKQHAFVRGLQLDV
SLAVAWAYLGKIYRKEGEKQLAKQAFDRARSIDPSLALPWAGMSVDTHAGGNTLYEAYES
CLRAVQTLPLAEFQIGLGKLAALSGHLSSPLVFGAIRQAVQRAPHYPESHNLNGLVCEAR
SDYQSAVASYRLARFTICTSNSMGQDSLFCDISFNLARSLLLAGNALDAVRECELLKREG
LLDSQGLQVYAISLWKLGKNDLALSMARNLAASVSTMESTSGATSISLIFKLLYHISGIE
SAVTSILKMPRELLQSSKISFIVSAIHALDHSSRLESIVSITRRFVTSHEEITGMHSLIA
LSKLVKQGSELNMEIQSRANHLKKALHMYPNSSLIRNELGYLLLSSKEWKDTHEVTRCVV
VDPPGRPSVEASKSAYKILGAAAIACYACGTTNQKFSFPTCKDRFMHEGHATKQMQKWLH
QEPWNDNARFLLLLNVLQKAREERFPQHLCVTLKRLLSAALLDEVYSKKDISYQYQKFQL
LLCASEISFQGGDHFGCINHATNASRLALPGEILFFAHLLLCRAYAVQEDLSRLQGEYLK
CLQLKTDIQIGWVCLKLLVSRYKLQIDSNTIDLNFEECFRERKSTSNMWMAVFDLVRGQI
FIRNQDYHSAQETFAHACSLARADSCVLLCHGAICMELARQGYGSQFLSLAASSLRKAQG
SAVIPLPIVSALLAQAEGSLGSKAKWEKNVRLEWFSWPPEMRPAELYFQMYLLAMQLKAG
SDSASNIESYQSPKRWVLRAIHLNPSCLRYWKVLSKVERLP
NT seq
3546 nt
NT seq
+upstream
nt +downstream
nt
atgggagacaaggaagacgaagctcgcctgaaacaactgcaagagactgtagattccgac
ccgaacaacccttctcaccattacaatctcgggcttttcttgtgggagaaagttgatgag
tcgaaggaatttaaggaaaaagcagtggagcattttgttatctccgccaagttaaaccct
aacaatggctctgcgtttcgcttcttagggcattactacagccgtgtgtcagtcgactcc
caaagagcttcaaagtgctaccagagagctgtgactctcaatccagatgattttgaagct
ggggaggatctttgtgatttgttggatgacgaaggaaaagagagcctggagattgtggtc
tgccgagaagcttcggagaagtcgcccagagctttttgggctttccggagattaggttac
ctgcaggtgcatcaaaagaaatggtctgaagcagtacagagccttcaacatgcgataaga
ggctaccccacgtgtgcagatttgtgggaagctttgggtcttgcatatcagcgacttggc
atgcttacagctgctataaagtcatatgggcgagccattgaattggaggactcaagagtc
tttgcattggttgagagtggaaacattttattgatgcttggatcctttagaaaaggaatt
gagcagttacgacaggctttagacatatcacctcataatgttgctgcactctatgggctt
gcttctgggctgcttggtttgtcaaaggaatgtgtacattctggtgcttttggttgggga
acttcgctgttggaggaagcgtctgagattgtgaaaacaagtatacctttggctggaaat
aatgcctgttcttggaaattgcatggtgatattcagcttacatatgcaaaatgtttccca
tggatggaagaaggttttagcttagaaactgatgaggcttttagaaattccatcctttct
tggaaaaggaagtgtctttcagctgcaatagctgcgagtcgttcctatcagcggtctttg
cacttggctccgtggcaagctaacatctatactgacattgcgatctctcttgatctcatt
tgttctttggaggagaggagtaaacctgaaccagatgcttggcagttacctgagaagatg
tctcttggtggtttactacttgaaggagacaacaatgatttctgggtggctctaggttgt
ttatccaacaacaatgcattaaaacaacatgcttttgtcaggggattgcagttggatgta
tctcttgctgttgcatgggcataccttggaaagatttacagaaaagagggtgagaaacaa
ttggcgaagcaggcatttgatcgtgctaggagcatagatccttcacttgcattaccatgg
gcaggcatgtcagtggatactcatgctgggggtaacacactatacgaggcttatgaaagc
tgtctacgggctgttcagacattgcctctcgcagagttccagattggtcttggaaagctc
gctgctctttcaggccacctgtcgtctcccttagtttttggagccatccgacaggctgtg
cagcgtgcacctcactatcctgagtcacataatctaaatgggctggtttgtgaggcgagg
tcggattatcagtctgctgttgcttcttataggcttgctcgattcaccatctgtacttct
aacagcatgggacaagattccctcttctgtgacatttcttttaatctggccaggtcactt
cttttggcagggaatgctcttgatgctgttcgagaatgtgagcttctgaagagagaaggt
ttgcttgatagccagggcttgcaggtgtatgccatctctttatggaaacttggcaagaat
gacctggccctttctatggcaagaaacttagctgcgagtgtttctacgatggaaagcaca
tctggtgctacctccattagtttgatctttaaattgctgtaccacatttcggggatagaa
tctgcagtaacaagcatcctgaaaatgccgagggaactattgcagagttcaaaaatcagt
tttattgtctctgcaattcatgctctagaccatagtagcagactcgagtcaattgtttca
attacacgtcgttttgttacatcacatgaggagattactggaatgcactctttaatcgcc
ttaagcaaactagtcaaacaaggatcagaactgaacatggaaattcagagtagagccaat
cacctcaaaaaagctcttcatatgtaccctaacagcagtttgataaggaatgaactaggt
tatcttttgctatccagtaaggaatggaaagatacacatgaagttactagatgtgttgtc
gtagaccctcctggtcgcccgagtgtggaggcatcaaaatcggcatacaagattctaggt
gctgctgcaattgcatgctatgcctgtggtacgaccaaccaaaagttctccttccctacg
tgtaaagaccggttcatgcatgaaggacacgcaaccaaacaaatgcagaagtggttacat
caagaaccgtggaacgacaatgctcggttcttgcttctacttaatgttcttcagaaggct
cgtgaagagagatttcctcagcatctttgtgttacacttaaacggctactatcagccgct
ctcttggatgaagtatattcaaagaaagatatctcttatcaatatcagaagttccaactt
ctcctctgtgcttcagagatcagtttccaaggtggagaccactttggatgcatcaaccac
gctacaaatgcatcaaggctcgctcttcctggtgaaattctattttttgcacatctgcta
ctatgccgtgcctatgcagttcaagaggatttatcgagactgcagggtgagtatttgaaa
tgcttgcagctcaagacagatattcaaattggttgggtatgcctcaaacttctagtatct
agatacaaactccagattgattcgaataccatagacttgaacttcgaagagtgcttcaga
gagagaaagagtacttcgaatatgtggatggccgtctttgatttagtaagaggtcaaatt
ttcatacggaatcaggattatcattctgctcaagaaacatttgcacatgcttgttcgttg
gcaagagcagatagttgtgtccttctatgccatggggccatttgtatggagcttgccagg
caggggtatggttcgcagttcttatctctggcagcaagtagtctcagaaaagctcaaggg
tccgctgtcattcctctccctattgtatctgcattgctggctcaagcagaaggaagcctt
ggctccaaagcaaaatgggagaaaaacgtccgtcttgaatggttttcttggccaccagag
atgaggcctgcagaattgtattttcaaatgtatttgcttgcaatgcaactgaaagctggt
tctgattctgcatcaaatattgagtcctatcaaagtccgaagagatgggttctccgagca
atacatttgaacccatcctgtttacgatactggaaagttttatcgaaggtggagcgactg
ccctag
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