Macadamia integrifolia (macadamia nut): 122083648
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Entry
122083648 CDS
T07436
Name
(RefSeq) ATP-dependent RNA helicase DEAH11, chloroplastic-like isoform X1
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
ming
Macadamia integrifolia (macadamia nut)
Pathway
ming03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ming00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122083648
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ming03041
]
122083648
Enzymes [BR:
ming01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
122083648
Spliceosome [BR:
ming03041
]
Complex C
Other components
Step II factors
122083648
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RBD_DEAH11
KH_DEAH11_1st
KH_DEAH11_2nd
RRM_DEAH11
KH_DEAH11
Helicase_C
IBR
OB_NTP_bind
DEAD
HA2_C
AAA_22
RRM_1
AAA_19
IBR_1
ABC_tran
HA2_N
ResIII
AAA_29
T2SSE
Motif
Other DBs
NCBI-GeneID:
122083648
NCBI-ProteinID:
XP_042507454
LinkDB
All DBs
Position
1:29884282..29921869
Genome browser
AA seq
1774 aa
AA seq
DB search
MRNVESSGSRKMEREQEQGIVIHSKSTVDMRRGVLPTRTTVRRGNNNRKGVVPANYSSVL
SPYQERRVNFHGNSPKDNRKLDNFVVVLQSEKSGFCKTSIEALIACCSSIPENYFVFSPE
CVVIAKLFFKQWSDVVEALVYFWEQRLDGIHLLEPSVQPNEFLPSDTEDLKERLKDLFVS
RVKSLLDGEEVKRWQKKIEQATDEIAYVSASLRKPQSIVGFDELTLKKKGLVATREVIKK
RVREFKSAMNCILDYFNGLTSPDCFDDTIEVLRFSGDFDWSQIHHVMLREILRLDEGLPI
YASRKEVLKEINCQQVMVLIGETGSGKSTQLVQFLSDSGIGADGHIICTQPRKIAAVSVA
QRVMEESKGCYNADLVACCPTYSSTQVFDKKVVFMTDHCLLQHYMKDKNLTGISCIIVDE
AHERSLNTDLLLALLKNLLNERPGLRLIIMSATADADKLSDYYFGCGTFHVVGRNFPVEI
IYLPCASEGTSASSKSYSGACASYVSDVVDKATEIHRAEEEEMGAILVFLTSQMEVEWAC
ENFQVPNAVAFPLHGKLSNEEQNRVFRDYPGKRKVIFATNLAETSLTIPGVKYVVDSGMV
KESRFEPCTGMNVLKVCRASQSSADQRAGRAGRTSPGKCYRMYSKNDFQSMPSHQEPEIR
RVHLGVAVLRIFALGIKNVQEFDFVDAPSTKAIEMAIRNLLQLGAITFKNGSFELTDDGL
YLVKLGIEPRLGKLILGGCSHGLHKEGLVLAAVMANASSIFCRVGTDEEKLKADCLKVQF
CHQDGDLLTLLSVYKEWEGVPQDKKNKWCWDNSINAKTMRRCKETVLELEHCLKGELNIT
ITNCWLWNPRESTEHDKNLKSIILSSLSENIAMYSGYGRFGYVVALTGQHVQLHPSCSLL
LYGQTPCWVVFGELLSISNQYLVCVTAFDLDCLSTLCPRPLFDISQMESQKLQLSLRTGF
GSVILKRLCGKSNNNLLHLVSRIQSACMDRWIGIDVDVDRGEIQLFATVEDMGKASSLVD
DALHYEMKWLRDECIEKCLYRGGPGVSPSVALFGSGAEIKHLELEKRFLTVDVFHPYAGA
LDDKKLLMTFENCASGICGFQKYACIGQDGENGEKWGRIAFVSPEAAEKAAAELDGFEFN
GNFLKVSPSWVSIGGDAKMLSFPAVKAKVSWPRRYSKGFAIIRCARQDVDSIIEDCSNLL
IRGRFVRCELSKKDMGSIVMHGLDKEISEQEILEILKVVTDRRILDVFLVRGEPVTNLPS
ACEEALLREIAPFMPVKSPLSNCCWVQVFPPEPMDYSMKAQITFDGRLHLEAAKALQHMQ
GNVLPGCLPWQKILCQQMFHTSVSCPAPVYHVVKTQLDSLLESFKHRKGVFCNLERNENG
SFRVKISANATKTVAELRKPLEQLMKGTTINNASLTPSILQLLFTKDGILLIKSIQRETG
TYILYDRQNMNIKVFGLLEKVAIAEKRLVQSLLSLHENKQLEINLRGAELPPNLMKAVVE
KFGPDLQGLKEKVPSAEFMLSTRRHVIFVRGNKESKQEVEEIIYEFMKSLSGSSQTEQPK
GEGTCPICLCEVEDCYQLQGCAHLFCRACLVEQCESAIKSHDGFPLRCTHEGCETLIVVA
DFRSLLSSEKLEDLFRASLGAYVIASGGTYRFCPSPDCPSVYRVADPGTTGVPFSCGACH
VETCTGCHLEYHPFVSCERYKEFKVDPDLSLQEWCKGKEQVKTCRACGYTIEKVDGCNHI
ECKCGRHICWVCLELFKSSDQCYDHLRSVHQAII
NT seq
5325 nt
NT seq
+upstream
nt +downstream
nt
atgaggaatgtggaaagtagcggttcccgaaagatggagagagaacaagaacagggcatc
gttatacactctaaatccacagtagatatgcgcagaggcgtacttccaactcggacaact
gtccggcgggggaataataaccggaaaggcgttgttccggctaattacagttctgtactg
tctccataccaggagagaagagtcaactttcatggcaattctccgaaagataatcgaaaa
ttggataattttgttgtggtgcttcagtcagagaaaagtggtttctgcaagaccagcata
gaggctttaattgcttgttgcagttcgatacctgagaactactttgttttctctcctgag
tgtgttgtgatagcgaagctgtttttcaagcaatggagtgatgtagtagaagctctggtt
tacttctgggagcagcgactcgatggcattcatcttctagaaccgtccgtgcaacctaac
gagttcttgccttctgatacggaggacttaaaggaacggctcaaagacctctttgtctcc
cgagtcaagagtcttttggacggagaggaagtcaagcgatggcagaagaagattgagcaa
gccactgatgagatcgcttacgtctcggcttcactccgaaagcctcagagtatcgttggt
tttgatgagcttacgttgaagaagaagggacttgttgctacaagggaggttatcaagaag
agagtcagggaatttaagtctgctatgaactgtatacttgattatttcaatgggttgacg
tccccagactgttttgatgatacaattgaggtgttaaggtttagtggtgattttgattgg
agtcagattcatcacgttatgctgcgggagattcttcgccttgatgagggtttgccaatt
tatgcttcgcggaaggaagttctcaaggaaataaattgccagcaggtcatggtcttaatt
ggagagactggttcagggaagagtacacagttggttcagtttctttctgattcaggaata
ggtgctgatggccatattatatgcactcagcctcgcaaaattgctgccgtctctgtggca
caaagggttatggaagaaagtaaaggttgttacaatgctgatttagttgcttgttgtcca
acatactcatctacccaagtttttgataaaaaggttgtttttatgacggaccactgtcta
ctgcaacactacatgaaagataagaatttaactgggatttcatgcatcattgtagatgag
gctcatgaaagaagcttaaacactgatcttcttttggcactgctaaaaaacctactgaat
gagaggcctggtctgagacttatcataatgtcagcaacagctgatgcagataagctttca
gattactactttggttgcggaacattccatgttgttggaagaaattttcctgttgaaatc
atatatcttccttgtgcatccgaaggaacttctgcctcttcaaaatcttattctggtgct
tgtgcttcatatgtttctgatgttgtggataaggcgactgagattcacagagcagaggaa
gaggaaatgggggccatacttgtttttttgacttctcagatggaagtggaatgggcttgt
gagaactttcaggtccccaatgcagttgcatttccattacatgggaaactttcgaatgaa
gagcaaaatcgtgttttccgtgattaccctggaaagaggaaagtaatttttgccactaat
ctagccgagacatcattgactatccctggggttaagtatgtcgtagattctggcatggtc
aaagagagcagatttgagccttgcaccggtatgaatgttcttaaagtttgcagggctagt
caaagttctgctgatcaacgtgccggccgtgctggtcgaacatcaccaggaaaatgttac
agaatgtactcaaaaaatgattttcagtctatgccttcacaccaggaacctgaaattcgc
agggttcatcttggtgttgcagttctgaggatttttgcgctgggcatcaagaatgtccaa
gagtttgattttgttgatgcgcctagtaccaaggcaattgaaatggcaatcaggaatctt
cttcagctaggtgcgattactttcaaaaatggttcttttgaattaactgatgatggtttg
tacttggttaaattgggtattgagcctcgactcggaaaactgatccttggtggctgcagt
catggtttgcataaagagggtcttgttcttgctgctgtgatggctaatgccagtagcatt
ttttgcagagttggcactgatgaagagaaattgaaagctgactgtctgaaggttcagttc
tgccatcaggatggcgaccttctaacccttctctctgtttacaaggaatgggagggtgtg
ccccaagacaagaaaaacaaatggtgttgggataacagcattaatgcaaagaccatgcga
agatgtaaagagactgttttggaattggaacattgccttaaaggtgaactaaatattact
atcacaaattgctggctttggaacccccgtgagtccactgagcatgataaaaatctgaag
agcattatactttcatccctttcagaaaacattgccatgtattctggatatggtcgattt
ggatatgtagtggccttaactggacaacatgttcaactgcatccttcttgttctttgcta
ttatatggtcagacaccttgttgggtagtttttggtgaacttctatcaatatcaaatcaa
tatttggtttgtgttactgcttttgacctcgactgcctatctaccctttgtccccgtcct
ttgttcgacatctcacagatggagagccagaagctgcagttgagtttgaggaccggattt
ggcagtgttatattgaaaagattatgtgggaagtcaaacaataacttgcttcatcttgta
tcacgcattcaatcagcttgcatggacagatggattggtattgatgttgatgttgatagg
ggagagattcaattgtttgccactgtggaagatatggggaaggcttctagtcttgttgat
gatgcattgcactatgaaatgaaatggttaagagatgaatgcatagagaaatgcttgtac
cgtggcggacctggtgtttctccctctgtagctttgtttggatctggtgctgaaatcaaa
catctggaactggaaaagagatttttaactgtggatgttttccatccatatgcaggtgct
cttgatgataagaaacttcttatgacttttgagaattgtgcatctggtatctgtggcttc
caaaaatatgcctgcattggacaagatggtgagaacggtgaaaagtggggcaggatagcg
tttgtttcccctgaagctgctgaaaaagcagctgcagagctagatggttttgaattcaat
ggcaattttctgaaggtgtccccttcctgggtaagcattggaggtgatgcaaaaatgctt
tcatttcctgctgtaaaagccaaggtttcttggccacgcaggtatagcaagggttttgca
atcattaggtgtgctagacaggatgttgattctataattgaagactgttctaacctgctg
attagaggtcggttcgttcgttgtgaacttagcaagaaggatatgggttctattgtcatg
catgggcttgataaagaaatttctgaacaagagattcttgaaattttgaaagttgtaaca
gataggagaattctggatgttttcctggtaaggggagaacctgttactaacctaccatct
gcctgtgaagaagcacttcttcgggaaattgctcccttcatgcctgtgaagagtccccta
agcaattgttgctgggtacaggtattccctcctgaaccaatggattattcgatgaaagct
caaataacttttgatggaagactgcatttggaggcagcaaaggctttgcagcacatgcag
ggaaatgtgctccctggctgtcttccatggcagaagatactatgccaacagatgtttcat
acctctgtatcatgccctgctcctgtttatcatgttgttaagacacagctggattcttta
cttgaaagcttcaagcatcgaaagggggtattctgcaatcttgaaaggaatgagaatggc
tcctttcgtgtaaaaatatctgcaaatgctacaaagactgtggcagagttgagaaagccg
ctggagcagctgatgaaagggacgaccataaataatgctagcctaactcccagcatactg
caacttctcttcacaaaagatggcattctactcatcaagtcaattcaacgagagacgggg
acatatatcctttatgataggcagaacatgaacattaaagtctttggtttgctggagaaa
gttgctattgctgagaagagattggttcaatctcttttaagtctccatgaaaacaagcaa
ctagaaattaacctgcgtggtgcggagctgccacccaacctgatgaaagcagtggttgag
aagtttgggccagacctacaggggctcaaggagaaggtacctagtgctgagtttatgctt
agtactcgccgtcatgtgatatttgtacggggtaacaaggagtcgaagcaagaagtagag
gagattatttatgaatttatgaagtctctaagtggtagttcacagactgagcagccaaaa
ggtgaaggtacctgccccatttgcttgtgtgaggtggaggattgttaccagcttcagggt
tgtgcacacttgttttgccgggcatgcttggtagagcagtgtgagtctgcaattaaaagc
catgatgggtttcctctgcgctgcacccacgaggggtgtgaaaccctcattgttgttgca
gactttaggagtctgttgtccagtgagaagttggaggatctattcagggcttctttaggg
gcatatgtaatcgctagtggtggtacctacaggttttgcccatctcctgattgtccttca
gtttatcgagtggcagatcctgggacaactggtgtgccattttcttgtggggcctgtcat
gtggagacatgcacggggtgtcacttagaataccatccgtttgtgtcatgtgagaggtac
aaggagttcaaggttgatccagatttgtcacttcaagagtggtgcaaagggaaggaacaa
gtcaagacctgccgtgcctgcggatatacaatagagaaggtggatggatgcaatcacatc
gagtgcaagtgtgggaggcacatttgctgggtctgtttggagttatttaagagcagtgac
caatgctatgaccacctgaggtctgtacaccaagctataatatga
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integrated database retrieval system
