Macadamia integrifolia (macadamia nut): 122084481
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Entry
122084481 CDS
T07436
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 3-I-like
KO
K14403
cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
Organism
ming
Macadamia integrifolia (macadamia nut)
Pathway
ming03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ming00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
122084481
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ming03021
]
122084481
03019 Messenger RNA biogenesis [BR:
ming03019
]
122084481
Transcription machinery [BR:
ming03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
122084481
Messenger RNA biogenesis [BR:
ming03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
122084481
U7-dependent histone pre-mRNA processing factors
122084481
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CPSF73-100_C
Beta-Casp
RMMBL
Lactamase_B_6
Motif
Other DBs
NCBI-GeneID:
122084481
NCBI-ProteinID:
XP_042508687
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All DBs
Position
7:complement(6845743..6858896)
Genome browser
AA seq
587 aa
AA seq
DB search
MTHATKAIYKLLLSDYVKVSKVSVEDMLYDEQDILRSMDKIEVIDFHQTLEVNGIRFWCY
TAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAEIPQFSPDICIIESTYGVQLHQP
RLVREKRFTDVIHSTISQGGRVLIPAFALGRAQELLLILDEYWSNHPELHNIPIYYASPL
AKRCMAVYQTYINAMNERIRNQFANSNPFDFKHISPLKSIENFEDVGPSVVMASPSGLQS
GLSRQLFDMWCSDKKNACVIPGYVVEGTLAKTIINEPKEVTLMNGLTAPLNMQVHYISFS
AHADFAQTSTFLKELMPPNIILVHGEATEMGRLKQKLITQFTDRNTKIMSPKNCQSVEMY
FNSEKMAKTIGRLAEKTPEAGETVSGLLVKKGFTYQIMAPEDLHVFSQLSTANITQRISV
PYSGAFGVIKHRLMQIYESVNSLPNEESEGPALLVHERVTVKQESERHVSLQWTSDPISD
MVSDSVVAVILNITRDLPKVTAVAETAKTEDAKTGEKVIHALLVSLFGDVKTGEEGNILV
TVDSNVARLDVKTGEVDCENDSLKDRVCTAFRRIQSAVRPIPLSVSS
NT seq
1764 nt
NT seq
+upstream
nt +downstream
nt
atgactcatgcaactaaagccatatacaagcttcttttatccgattatgttaaagtcagc
aaagtatcagttgaagatatgttgtatgatgaacaagatattctccgatccatggacaag
attgaggttattgacttccaccagacactagaagtgaatggaattcgtttctggtgctat
actgctggtcatgtccttggtgctgccatgttcatggttgacattgcaggagttcgggtg
ctctacactggagactactcaagggaggaagatcgccatctccgtgcagctgagatccct
cagttttcccctgatatctgtataattgaatccacctatggtgtacaacttcaccagcct
cggcttgtgagggagaaacgcttcacagatgttatccactcaaccatttctcagggtggt
cgtgtcctcatcccagcatttgcacttggccgggcccaggagctcctcctcatccttgat
gagtactggtcaaaccatcctgaacttcacaacattccaatctactatgcttctcctctg
gccaagaggtgcatggcagtttaccagacatatatcaatgccatgaatgagaggatccga
aatcagtttgccaattctaacccattcgacttcaagcacatctcacctttgaaaagtatt
gagaattttgaggatgttgggccatcagttgtgatggcaagcccaagtgggctgcagagt
ggcttatcacgacaactctttgatatgtggtgctctgataagaagaatgcatgtgtgatt
cctgggtatgttgtggagggtaccctggcaaagaccatcatcaatgaaccgaaggaagtc
actctcatgaatggcctcactgcccctctcaatatgcaagtacactacatttccttctca
gcccatgctgattttgcccagacaagtacgttcttgaaagagctcatgcctcctaatata
atccttgttcatggagaggccactgaaatggggaggcttaaacagaagctcattacccag
tttactgatcggaacaccaaaattatgtccccaaagaactgccaatctgttgaaatgtat
ttcaactcggagaaaatggccaaaacgattggaagattggctgaaaaaactccagaagca
ggtgaaacagtcagtggtttgctagtcaagaaaggcttcacttatcagataatggcaccc
gaagatctacatgtcttctctcagctatccactgccaacatcactcagaggatttcagtg
ccctactctggtgcatttggtgtgattaagcacagactcatgcagatatatgagagtgta
aattctctcccaaatgaagagtctgagggcccagcactactagtgcatgagcgtgtgaca
gttaaacaagaatcagaaagacatgtatcattgcaatggacatcagaccctattagcgac
atggtctctgattcagttgttgctgtgatactgaacattacacgtgaccttcccaaggta
acagcagtggcagagactgctaaaactgaggatgcaaagacaggtgaaaaggtaatccat
gctttgttggtgtcgttgtttggagatgtcaagactggagaggaggggaatattctggtg
actgttgatagcaatgtggcacgcctagatgtgaagactggagaagttgattgtgagaat
gacagtttaaaggatcgagtctgcacagctttccgccggatccagagcgctgtaaggcct
atcccgctgtctgtctctagctag
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