Macadamia integrifolia (macadamia nut): 122084719
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Entry
122084719 CDS
T07436
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH9-like
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
ming
Macadamia integrifolia (macadamia nut)
Pathway
ming03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ming00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
122084719
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ming03019
]
122084719
03041 Spliceosome [BR:
ming03041
]
122084719
03009 Ribosome biogenesis [BR:
ming03009
]
122084719
03016 Transfer RNA biogenesis [BR:
ming03016
]
122084719
Enzymes [BR:
ming01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
122084719
Messenger RNA biogenesis [BR:
ming03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
122084719
Spliceosome [BR:
ming03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
122084719
Complex C
U4/U6.U5 tri-SnRNP related factors
122084719
Ribosome biogenesis [BR:
ming03009
]
Eukaryotic type
Pre-60S particles
Helicases
122084719
Transfer RNA biogenesis [BR:
ming03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
122084719
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
MTR4-like_stalk
Helicase_C
Motif
Other DBs
NCBI-GeneID:
122084719
NCBI-ProteinID:
XP_042509096
LinkDB
All DBs
Position
7:complement(8994835..9009335)
Genome browser
AA seq
682 aa
AA seq
DB search
MNEGPSPSTPHVSEIDDDPDPEIHNPPNQHRPNPTPPPPFTPYQNQDPKQFFTLDDIPVS
KWASRIVSNMLPLLKRGIGVHHSGLLPILKEVIEILFQEGFIKCLFATETFSIGLNMPAK
TVVFTNVRKFDGDKFRWVSSGEYIQMSGRAGRRGIDERGICILMVDEKLEPSTAKMMLKG
SADCLNSAFHLSYNMLLNQMRCEDGDPENLLRNSFYQFQSDRAIPDLEKQAKDLEVERDS
IEIEEEESLKDYYNLLQQYKSLKRDVRDIVCSQRYCLPFLQPGRLVRIHCSVSDEKTPSF
SLEEQVTWGVIINFERVKGISEDDVIRKPEDANYKVDVLTRCMVNKDGVSKNSIRIVPLK
ESGESIVISVHLAQIDSLSSIRLIIPKDLLPLQARENTLKKISEVLSRFAKEGMPLLDPE
EDMKVPSNLYKKAVRRIEALEHLFEKHEVAKAPLVEQKLKVLHMKQDLTAKIRSLRKAMR
SSRVLAFKDELKARKRVLRRIGYITTDDVVELKGKVACEISSADELTLTELMFNGVLKDI
NVEEMVSLLSCFVWQEKLQDAQKPREELDLLFTQLQETARRVAKVQLECKVQIDVEKFVN
SFRPDIMEAVYAWAKGSKFYEIMDISQVFEGSLIRAIRRLEEVLQQLIQAAKSIGETELE
TKFEEAVAKIKRDIVFAASLYL
NT seq
2049 nt
NT seq
+upstream
nt +downstream
nt
atgaatgaaggtcctagcccatctactcctcatgtctcagaaattgatgatgaccctgac
cctgaaattcacaatcctcctaaccaacacaggcctaatcctactccacctcctcctttt
accccataccaaaatcaggatcctaaacaatttttcacattggatgatattcctgtttcc
aaatgggcttcaagaattgtttcaaatatgttacctctgttgaagcgtgggataggagtg
caccactctggcttgcttccgatcttgaaggaagtgattgagatactctttcaagaagga
tttattaagtgcttatttgccacagagaccttcagcataggtttgaacatgccagcaaaa
actgttgtgtttacaaatgtacgtaaatttgatggggataagtttagatgggtatccagt
ggagagtacatacaaatgagtggtcgtgctggccgtcgaggtattgatgaacgtgggata
tgcatccttatggtggatgagaagctggagccatctacagctaaaatgatgctgaaagga
agtgctgactgtttgaacagtgccttccatctaagctacaacatgcttttgaatcaaatg
cgatgtgaggatggtgatccagaaaatctgctcaggaattcattctatcagtttcaatct
gaccgtgccattcctgatcttgagaaacaagcaaaggaccttgaagtggagagagattca
attgaaattgaagaagaggagagtctaaaggattactacaatctcttacagcagtacaaa
agtttgaaaagggatgtacgtgatattgtgtgctcacagaggtactgtttacccttttta
cagccaggaagacttgtgcgcatccactgctcagttagtgatgaaaaaactccatctttc
tcacttgaggagcaggttacatggggagtgataatcaattttgaaagggtaaagggcatt
tctgaagatgatgtgattagaaagcctgaggatgcaaattacaaagtggatgttcttact
agatgcatggtgaacaaagatggagtttcaaaaaattcgattaggattgttccattgaag
gaatccggagagtcaattgtcatttccgtacacctggctcagattgatagtttgagtagt
atccgccttatcatcccaaaggatcttttgccattgcaagctcgagaaaatactctgaaa
aagatctcggaagtgctttccagatttgctaaagagggaatgcccttactagatcctgaa
gaagacatgaaggttccaagtaacttgtacaaaaaggctgtccgccggattgaggctttg
gagcacctgtttgaaaagcatgaggttgcaaaggctccacttgttgagcaaaagctcaaa
gtcttacacatgaagcaggatttaacagccaaaatcaggtcactaaggaaagctatgcgt
tcgtccagagtcttggcttttaaagatgaacttaaagcccgcaaacgagttcttcggagg
attggatacattacaactgatgatgttgtggagttgaagggaaaagttgcttgcgagata
agtagtgcagatgagctcacactgacagaactcatgttcaatggggtgttgaaggacata
aatgtggaagagatggtttctcttctctcttgttttgtgtggcaggagaagctacaggat
gcccagaagccccgggaagaactcgatttgctttttactcaattacaagagaccgcaagg
agggttgccaaggtccagcttgagtgcaaggtccaaattgatgttgaaaaattcgtaaat
tctttccggcccgacattatggaggctgtttatgcttgggcaaaaggttccaagttctac
gagattatggacatctcacaggtctttgagggtagcctgatcagggccatcaggaggttg
gaggaagtcctgcagcaactcatacaagctgcaaaatctattggagaaactgagcttgaa
acaaaatttgaagaggctgtcgcaaagattaagagggatattgtatttgcagcatctctg
tatttgtag
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