Macadamia integrifolia (macadamia nut): 122086011
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Entry
122086011 CDS
T07436
Name
(RefSeq) LOW QUALITY PROTEIN: SNF2 domain-containing protein CLASSY 3-like
KO
K10875
DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
Organism
ming
Macadamia integrifolia (macadamia nut)
Pathway
ming03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ming00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
122086011
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ming03400
]
122086011
DNA repair and recombination proteins [BR:
ming03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Rad54 family proteins
122086011
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
Helicase_C_2
Motif
Other DBs
NCBI-GeneID:
122086011
NCBI-ProteinID:
XP_042510609
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Position
8:complement(32106293..32118089)
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AA seq
1154 aa
AA seq
DB search
MDPFYYIAKRTKSRGAFSKSSVSSRGKCKKDQTKGSGLCSSRPVADSCNYIAKRTRSRAA
VINGTLSIEKNTREDRGMPLEGCGNSKRKKPTGDGHKDWASQELKHRKRGHSDNDDVEVV
VLDSEDDEEEYRGGEPTFDDSDDEDLGMDESHRELSSSSNGDEEKNETDAKTARGKNDDS
WESSTDFSDKNDDSEDEDFVMDKSHSEPSSSSSGDEDAENAADCHNVWKKNVVGERKERF
VGSRMTKSGSQNDPNIDTVPIDTSDENFLQFSSDGSGYLDDSSDENFVKKDINRSTSRPV
CSENCVAEQTKSHTVSRSEKKQKKKLETFGRPICLDKEVDDSLTENDEGDNDDEDGISGS
DESIDEVFAHNGTGGNGVQNEYRGRKEEEVGKSTKRKCVHAPKDVDQVFMALINSIWEKG
EAKVVLENSSSKHDAHKEEIYPPVVEVKFPLKFSFGIKKPIIVEKSESEKELDHLWGEFD
FALNSSEIGSFGSSPVDAKDTNVPDSELDPCVLCCQGKHQVILDETIGIRCRFCSFVKME
IKYLLPSWAKQPLKRPSQQIFSSDGDANMLNEFDFQDDGADSHYSHTFAEGTMWDFIPDL
RKRMYQHQCEGFEFMWKNLAGGIELEMLKKSTSSDGLGGCVISHAPGTGKTLLTIVFLKT
YMKMYPDCXPVIIDPLSILLTWEEEFRKWNIGIPFHNLNDPEILEKEISIVCGLAKRYRT
KKQRRMLKLYSWSAQTSILAISYSLFEKLAGERFAKGDKRQKIPCDNLTKEIRKILLEKP
GLLILDEGHTPRNTCSGIWKALTKIETERRIILSGTPFQNNFQELYNILCLVRPKFADVI
QSKGKWASLTSSIGKSSADGLEELRVMLDPSVHVHRGGILKHNLPGMRNWDIYLRPTSLQ
KELLDSVKGVSNNFELEHQVALVSVHLSLLMNIKDPLFGKADSISEKYLDSTRLNPNGGV
KTRFLMELVRLIKPTKERVLVFSQYIEPLKIIKEQLHEHFNWTEGKEVMQMQGNIESKQR
QSSINLFNDPASDARIFLASIRACSEGIQLIGASRVVLLDIVWNPSVYRQAISRAYRLGQ
KRFVYTYLLITSGTMEEEKYKKQAEKEEISKLVFSSRNANDERMNALSRVPDDDILGEMV
QNSKLKDIFKMVCQ
NT seq
3465 nt
NT seq
+upstream
nt +downstream
nt
atggatcctttctactatatagcaaagagaactaagtctcgaggtgcatttagcaaatca
agtgtgtctagtagaggaaagtgcaaaaaagatcagactaaggggtctggactatgcagc
agtagaccggtggctgattcctgcaattatattgcaaagagaactaggtctcgtgctgca
gttattaatggaactttgtccattgaaaagaatacgagggaagaccgtggtatgccattg
gagggatgcggcaacagcaagagaaagaagcctacaggtgatggacataaggattgggct
tctcaagaattaaagcatcgcaaaagaggtcatagtgacaatgacgatgtggaagttgtt
gttcttgacagtgaggatgatgaagaagaatatagaggtggagagcctacttttgatgat
tctgacgatgaggatttgggaatggacgagtcccacagagagctgtcaagttcttcaaat
ggagacgaagagaaaaatgaaactgatgcgaagactgcacgtggcaagaatgatgattct
tgggaatcatctactgatttcagtgacaaaaatgatgattctgaagatgaggattttgtg
atggataaatcccatagtgagccatcaagttcttctagtggagacgaagatgcggaaaat
gccgctgattgccataatgtatggaaaaaaaatgttgttggggaaaggaaagagagattt
gtagggtctcgaatgacaaagtctgggagtcaaaatgaccctaatattgacactgttccc
attgatactagtgatgagaattttctgcaattctctagtgatggaagtggttacttagat
gattccagcgatgagaattttgtcaagaaagacattaataggagcacttcccgtcctgtt
tgttcggaaaattgtgtagcagaacaaactaaatcccataccgtttcaagatctgaaaaa
aaacagaaaaagaagcttgaaactttcggtcggccaatttgtttggataaggaagttgat
gattccttgactgagaatgatgagggtgacaatgatgatgaggatggaatcagtggcagt
gatgaaagcattgatgaagtgtttgcacataatggcactggtggcaatggtgttcaaaat
gaatatagggggagaaaggaagaggaagttggaaagtccacgaagagaaagtgtgtccat
gcaccaaaagatgttgatcaggttttcatggctctgattaattccatttgggagaagggg
gaagcgaaggtggttttggagaattcaagttctaaacatgatgctcacaaagaagaaata
tatccacctgtggttgaggtgaagtttccattgaagttctcttttggaattaagaagcct
ataatagtggagaagtcagaatctgagaaagaactggatcatttgtggggagagttcgat
tttgctctcaattccagtgagattggctcctttggttcttctccggttgatgctaaagac
accaatgtacctgactctgaactagatccatgtgttctttgttgtcaagggaagcatcag
gtcatccttgatgagactattggaatccgatgtaggttttgctcttttgtgaagatggag
attaaatatttattaccatcatgggctaaacagcctttgaagagacccagccagcaaata
ttttctagtgatggggatgccaatatgttgaatgagtttgatttccaagatgatggagct
gattcccattattcacatacttttgctgaaggcaccatgtgggacttcattcctgacctc
agaaagagaatgtatcaacaccagtgtgaaggttttgagtttatgtggaaaaacttagca
ggaggcattgaacttgagatgttgaagaagtccacaagttctgatggtttgggtgggtgt
gtgatttcacatgccccaggaacagggaagaccctcttgactatagtctttctcaagacg
tacatgaaaatgtacccagactgctgaccagtaattattgatccactcagcattctcctc
acttgggaagaagagttcagaaagtggaacattggcattccgttccataatctgaatgac
cccgagatccttgagaaagaaatttcaattgtctgtggcttggctaagaggtaccgaact
aagaaacagagacgtatgttgaagttgtattcctggtcagcacagacaagcatcctagcg
attagttatagtctctttgagaaacttgctggagaaagatttgccaaaggtgacaaaaga
caaaagattccatgtgacaatctaactaaggagataaggaagatccttcttgagaaacct
ggacttttaatccttgatgaagggcatacgcctcgtaacacttgtagtggcatttggaag
gctctgacaaaaattgaaacggagagacgaatcatcctttcgggaactccctttcagaat
aattttcaagagttgtacaatatcttgtgcttggtgaggccaaaatttgcagatgtgatc
cagtcaaaagggaaatgggcatctttgaccagttctattggaaaatcctctgctgatggg
ctagaggaacttagagttatgcttgatccttctgtgcatgtgcatagaggtggcatactt
aaacataatcttcctggaatgaggaactgggatatttatttacgtccaacctctttgcaa
aaggaactcctagatagtgttaaaggagtatcgaataactttgagctagaacatcaggtg
gccttagtttcagtccatctttctttattgatgaacatcaaggatcctttatttggaaaa
gcagattccatttctgaaaaatatttagacagtacgagactcaacccaaatggaggagtg
aaaacaaggttcctcatggaactcgtccgacttattaagccaacaaaggagagggttttg
gttttcagtcaatacattgaaccattgaagatcataaaagaacaacttcatgaacatttt
aattggactgaagggaaggaggtaatgcagatgcaaggaaatattgagtcaaagcagagg
cagtcctcaataaatctcttcaatgacccagcaagcgacgcaaggatttttctcgcatca
ataagggcttgttcagaaggtatacagttgattggagcttcaagggttgtcctacttgat
attgtttggaatccatctgtttacaggcaggccataagccgagcatatagacttgggcag
aaaaggtttgtatacacctatcttctcattacatctgggacaatggaggaggagaagtac
aaaaaacaggctgagaaggaggagatatcaaagttggttttttcttcaaggaatgcgaat
gatgagaggatgaatgctttgtcaagagtccccgacgatgatatcttaggagaaatggtt
caaaacagcaagctgaaagatatattcaaaatggtttgccagtga
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