Macadamia integrifolia (macadamia nut): 122086167
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Entry
122086167 CDS
T07436
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 8-like
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
ming
Macadamia integrifolia (macadamia nut)
Pathway
ming03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ming00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
122086167
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ming03019
]
122086167
03036 Chromosome and associated proteins [BR:
ming03036
]
122086167
Enzymes [BR:
ming01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
122086167
Messenger RNA biogenesis [BR:
ming03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
122086167
mRNA degradation factors
5'-3' decay
Decapping complex
122086167
Chromosome and associated proteins [BR:
ming03036
]
Eukaryotic type
Gene silencing
piRNA pathway
122086167
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
NA-iREase2
Motif
Other DBs
NCBI-GeneID:
122086167
NCBI-ProteinID:
XP_042510831
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All DBs
Position
8:19606149..19627466
Genome browser
AA seq
480 aa
AA seq
DB search
MNTRGRYPPGIGNGRGGNFNSNPNFQARNPQQQYVQRNTVQNQQLFQQQQWLRRNPMGND
SSYNEVEKAVQSETVDSSSQDWKAHLKIPTPDTRYRTEDVTATKGNEFEDYFLKRELLMG
IYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVIL
VPTRELALQTSQVCKELGKHLKIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLAK
KGVCILKDCSMLVMDEADKLLSPEFQPSVEHLIRFLPAHRQILMFSATFPVMVKDFKDRF
LHRPYIINLMDELTLKGITQYYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLA
KKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDF
PKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPQIDQTIYCR
NT seq
1443 nt
NT seq
+upstream
nt +downstream
nt
atgaatacgcgaggcaggtatccacccgggatcggcaacggtcgtggtggaaattttaac
tcaaaccctaactttcaagctcgaaatccccagcaacagtatgtgcagaggaatactgtc
caaaatcagcagctgtttcagcaacaacaatggctaagacggaatccaatgggaaatgat
tctagttacaatgaggtggagaaagcagtgcagtcagaaaccgttgattctagttctcaa
gactggaaggcacaccttaagataccgacacctgatacacgctacaggacagaggatgtg
actgctactaaaggaaatgaatttgaggactattttctgaagcgtgaactgcttatggga
atttatgagaagggttttgaaagaccttctcctatccaggaagaaagtattccgattgcc
ttgactggtagcgatattcttgctagagctaaaaatggaacggggaaaacagctgcattt
tgcattcctgcactggaaaaaattgatcaagacaataatgttattcaagttgttatattg
gttccaacccgagaattggctttgcagacatcacaagtttgtaaggagcttgggaagcat
ttgaagattcaagtcatggttactacaggaggaactagcttaaaggatgatatcatgcgt
ttatatcaacctgtccatttgcttgttggaacacctggcaggatacttgatcttgcaaaa
aaaggtgtttgcatcctgaaagattgctcaatgcttgttatggatgaggcagacaagctt
ttgtctccagaattccaaccttcagtggagcatctaattcgttttctgcctgcacaccgg
caaattttgatgttttcagctacatttcctgtaatggtgaaagattttaaagacagattt
ctacacagaccttacataatcaatctcatggacgagcttaccctcaagggtataacacaa
tactatgcttttgtagaagaaagacaaaaggtccactgcctaaacactcttttctccaag
cttcaaatcaaccagtcaatcatattttgcaactcagtgaatcgggtggaactgttggct
aagaagattacagagcttgggtattcttgcttctatattcatgctaagatgttacaagat
catcgaaaccgcgtatttcatgacttcagaaatggtgcttgcaggaatcttgtttgtact
gatttatttacaagggggatagacattcaagcggtcaatgtcgttattaactttgacttc
cccaagaactcagagacatacctacatagggttggtcgatcgggaaggtttggacacctt
ggattagctgttaatttgatcacctatgaggaccgcttcaacttgtacaggattgaacaa
gagcttgggactgaaataaagcaaattcctccacaaatagaccagactatttactgccgg
tga
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