Macadamia integrifolia (macadamia nut): 122087280
Help
Entry
122087280 CDS
T07436
Name
(RefSeq) probable NOT transcription complex subunit VIP2
KO
K12605
CCR4-NOT transcription complex subunit 2
Organism
ming
Macadamia integrifolia (macadamia nut)
Pathway
ming03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ming00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
122087280
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ming03019
]
122087280
Messenger RNA biogenesis [BR:
ming03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
122087280
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
122087280
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NOT2_3_5_C
Motif
Other DBs
NCBI-GeneID:
122087280
NCBI-ProteinID:
XP_042512293
LinkDB
All DBs
Position
8:complement(18232925..18240420)
Genome browser
AA seq
620 aa
AA seq
DB search
MSGLLNSGLNGSSSNHQDTAGRPFGSSFSVQSASTAPVFHHTGSVQGLHNIHGSFNIPNM
PGTLSSRNSAMNGVPPNGVQQPAGSLSTGRFASNNLPVALSQISHASSHGHSGVTNRGGL
GVSPILGNSVPRITSSMGNIVGAGNVGRSLSSGGGLSMPGLASRLNLTGNSGSGSLSVQG
PNRLMGGMLPQAPQVLSILGNSYSPGGPLSQSQVQGGNNALSSMGMLNDVNSNDNSPFDI
NDFPQLSGRPSSAGGSQGQLGSLRKQSVGVLQQNQEFSIQNEDFPALPGYKGGNTDYAMD
LHQKEQLNDSAMSMMQSQHFPIGRSSGFSLGGTYSSHRQQQQQHSPSVGGSGVPFASANN
QDLLHMHGSDLFSSSHANYHSQVQNNGPPGLRPVNSPNSVSGMGSYDQLIHQYQQLQSQS
QFRLQQMSAVGQSYRDQNMKAMQAVPDRFGLLGLLSVIKLSNPELNSLALGTDLTTLGLN
LSSTNDIHKKFASPWSDEPAKGELEYTVPECYYAKLPPTLHQGYFAKFQPETLFYIFYSM
PKDEAQLYAANELYNRGWFYHKELRLWITRVSNMEPLVKTNTYERGSYLCFDPNAWETVR
KDNFVLHYEMLEKRPVLPQH
NT seq
1863 nt
NT seq
+upstream
nt +downstream
nt
atgtcaggcctactcaattcagggctcaacggatcatcttcaaatcatcaagacactgca
ggaaggccttttggatcatctttttctgtacaatctgcttccactgcccctgtttttcat
cacactggaagtgttcaaggactgcataacattcatggtagcttcaacattcccaacatg
ccaggcacactttcatcaagaaactctgcaatgaatggtgtcccaccaaatggcgttcaa
caacctgcaggaagcctttctactggacgttttgcatcaaacaaccttcctgttgctctt
tcccagatctctcatgccagttcacacgggcattctggggtcacgaatagaggaggattg
ggagtctctccaattttaggaaacagtgttcctcgaattacaagctcaatggggaacatc
gttggtgcgggcaatgtgggaaggagcttaagttctggtggaggactgtccatgcctggt
cttgcttctcgtttgaatttgacaggaaatagcggttctggtagtcttagtgtacaaggg
cctaacagactaatgggtggcatgcttccacaagcaccgcaggtgttatcaatactagga
aattcttactctcctggtggtcctttgtcccaaagtcaagtccaaggagggaataatgcc
ctaagttccatgggaatgctaaatgatgtcaactctaatgacaattctccttttgatata
aatgatttccctcagttgagtgggcgccctagttctgctggtggttctcaaggacaattg
ggttctctacggaagcagagtgttggtgttctccaacaaaatcaagaattcagcatccaa
aatgaagattttccagctttacctggatataaaggtggcaatactgattatgcaatggat
ctgcaccaaaaagaacaacttaatgacagtgccatgtctatgatgcaatcccagcatttc
cctatagggagatcaagtggcttcagcttaggaggtacatattcatcccatcgacagcaa
caacagcagcattctccatcagtgggtggtagtggggttccgtttgcatctgcaaataac
caagatctactccatatgcatggttctgatctattctcatcttcccatgcaaactatcac
tcacaggttcaaaataatgggccacctggattaagacctgttaactctcccaattcagtt
tctggtatgggatcctatgaccaacttattcatcagtatcaacagctccagagccagtct
cagtttcgcttgcagcaaatgtctgctgtgggtcagtcatatagagatcaaaacatgaag
gccatgcaagcagtgcctgatcggtttggattgcttggtttattaagtgtcataaaattg
agtaatccagagcttaattctcttgctctaggaactgatctgacaactcttgggctgaat
ttgagttcaaccaatgatattcacaaaaaatttgcttccccctggtctgatgagcctgct
aagggagaactcgaatacacagtgccagagtgctattatgctaaactaccacctacacta
catcaaggctactttgcaaaattccagccagagacattgttttatattttctacagcatg
ccaaaagatgaagcccagttgtatgccgctaatgaattgtacaacagaggttggttctac
cataaagagctgcgactgtggatcacaagggtctccaacatggagcctctggttaaaaca
aacacgtatgaaaggggttcctatctctgtttcgatccaaatgcatgggaaactgttcgg
aaggataatttcgtccttcattatgaaatgttggagaagagaccagtgttgccgcaacat
tag
DBGET
integrated database retrieval system
