Macadamia integrifolia (macadamia nut): 122087443
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Entry
122087443 CDS
T07436
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH1 isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
ming
Macadamia integrifolia (macadamia nut)
Pathway
ming03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ming00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
122087443
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ming03019
]
122087443
03012 Translation factors [BR:
ming03012
]
122087443
Enzymes [BR:
ming01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
122087443
Messenger RNA biogenesis [BR:
ming03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
122087443
Translation factors [BR:
ming03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
122087443
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
HA2_N
DEAD
AAA_22
nSTAND3
T2SSE
Rad17
Motif
Other DBs
NCBI-GeneID:
122087443
NCBI-ProteinID:
XP_042512519
LinkDB
All DBs
Position
8:13884005..13901350
Genome browser
AA seq
1043 aa
AA seq
DB search
MSLRCCVSAGCYTFYRNSSLSGSLRGLSFRFHSTLTAMSYRPNYQGGRRGGGAGGGGRGG
RRGGGGGGQRGGGGGGQRGGGGGGRGGGRGEQRWWDPVWRAERLRQQAAEVEVFDENEWW
SKIEQMKRGGEQEMIIKRNYSREGQQTLSDMAYQLGLYFHAYNKGKTLVVSKVPLPNYRA
DLDERHGSTQKEIQMSTETEKRVGNLLASSREAAGLDCSYGASSQGAKQSLPAVNVVIPR
LGMEANSAKEKTSLELKNKQEKTKASDHLKAMLPFREKLPAYKMKAEFLRAVADNQVLVV
SGETGCGKTTQLPQFILEDEISSLRGADCNIMCTQPRRISAISVAARISSERGENLGETV
GYQIRVEAKRSVQTRLLFCTTGVLLRQLIQDPNLTGVSHLLVDEIHERGMNEDFLLIILR
DLLPRRPDLRLILMSATINADMFSKYFGNAPTIHIPGFTFPVEEVFLEDLLEKTHYSIKS
ELENFQGNARRRRRQPDSKKDPLTEVFEEVDIDSHYKNYSTSTKQSLEAWSGAQIDLDLV
EATIEHICRHEGDGAILVFLTGWDEISKLLDQIRGNNFLGNPNKFLVLPLHGSMPTVNQR
EIFDRPPNNMRKIVLATNIAESSITIDDVVYVVDCGKAKETSYDALNKLACLLPSWISKA
SAHQRRGRAGRVQPGVCYRQFPKVIHDAMPQYQLPEILRTPLQELCLHIKTLQLGNIGSF
LAKALQPPDPLAVKNAIELLKMIGALDDDEELTPLGRHLCKLPLDPNIGKMLLMGSIFQC
LGPALTIASALAHRDPFVLPINRKEEADAAKRSFAGDSCSDHIALLKAFEGWKDAKSYGR
ERAFCWENFLSPITLQMMEDMRNQFLDLLSDIGFVDKSQGAKVYNRYSDDLEMVCAILCA
GLYPNVVQCKRIGKRTAFYTREVGKVDIHPASVNAGLFLFPLPYMVYSEKVKTTSIFIRD
STNISDYALLLFGGNLIPSKTGEGIEMLDGYLHFSASRSVLELIQNLRSKLDKLLQRKIE
EPGLDIHAEGKGVVAAVEELLHS
NT seq
3132 nt
NT seq
+upstream
nt +downstream
nt
atgtccctgcgctgctgcgtaagcgccggatgctacactttttataggaattcttcactc
tcaggttccctccgagggctttcgtttcggtttcatagcacattaactgccatgtcttac
cgtcctaactatcaaggtggccgccgtggcggtggtgccggaggtggaggacggggtggc
cgaagaggaggaggtggcggtggccaaagaggaggcggcggcggtggacaaagaggagga
ggcggaggtggccgtggtggcggtcgaggtgagcagcggtggtgggatcccgtctggcgg
gccgaacgtttgagacagcaggcagccgaggttgaagtctttgatgagaatgagtggtgg
agtaagatagagcagatgaagagaggaggtgagcaggagatgataattaagcggaactac
agtcgtgaagggcaacaaactctatctgacatggcttatcaactgggactttacttccat
gcatataacaaggggaagacacttgttgtcagtaaagttccattaccaaattacagggcg
gatcttgatgagcgtcatggatcaactcaaaaagagattcaaatgtccacagaaactgag
aaaagagttgggaatctgttggctagttccagagaagctgctggcttagattgttcttat
ggtgcatcaagccagggtgctaaacaatctttacctgctgtaaatgttgttatacccaga
ttaggaatggaggctaatagtgccaaggagaaaactagtcttgaactcaagaacaagcaa
gaaaaaacgaaggcaagtgaccacttaaaagcaatgcttccattcagggaaaaattacca
gcttacaaaatgaaggctgaatttttgagagctgttgctgataaccaggtgttggtggtc
tcaggagagacaggttgtggcaaaactacacagctgccccagtttatcctggaagatgaa
atatcttctcttcgtggggcagattgtaacataatgtgcactcagccccgtcgtatatct
gctatttctgttgcagctcggatttcttctgaaaggggagagaatcttggtgaaacagtt
gggtaccagatccgtgtggaagcaaaacgctcagttcaaactaggcttctattttgtacc
actggagtgttgctacggcaattgattcaagatccaaatttaactggtgttagtcatttg
ctagtggatgaaattcatgaaagaggcatgaatgaggactttcttttaataattttacgt
gatcttcttcctcgacgtccagatctccgtcttattctaatgagtgctactattaatgcg
gatatgttctccaagtactttggaaatgctccaaccattcatattcctggattcactttt
cctgtagaggaggtgtttctagaagatttgctagaaaaaacacattacagtatcaagtct
gagctcgaaaactttcagggaaatgcacggagaagaagaagacagcctgattcaaaaaaa
gatcctttgactgaagtgtttgaggaggttgatattgattctcactacaaaaactacagc
acatctacaaaacagtctcttgaagcttggtctggagcacagattgacctggaccttgtg
gaagcaacaattgagcatatctgtcgccatgaaggtgatggagctattctcgtcttcttg
actggctgggatgagatatctaagctactggaccaaattagagggaacaactttctggga
aatcctaacaaatttctagttcttccactgcatggctcgatgcctaccgtcaatcaacgt
gaaatatttgacagaccacctaataacatgaggaaaattgtgctagcgacaaacattgct
gagagtagcataacaatagatgatgttgtctatgttgtagactgtggaaaggcaaaggaa
actagttatgatgctctaaacaagttggcgtgtttgttgccatcatggatatcaaaagct
tcagcacatcagagacgagggcgtgcaggtcgtgtgcagcctggtgtctgttataggcag
ttcccaaaagttatccatgatgcaatgccccagtatcagttgcctgaaattctccgaaca
ccgttgcaagaactttgcctccatatcaaaactttacagctaggaaatattgggtcgttt
ctggcaaaagcacttcagccaccagaccctcttgctgttaaaaatgcaattgagcttctc
aaaatgattggagctctagatgatgatgaagaacttaccccacttggtcgtcatctttgt
aaattgcctttggatccaaatattgggaagatgcttttgatggggtctatctttcagtgc
cttggccctgcattaacaattgcttctgctcttgcgcatcgtgacccatttgtcctccca
ataaataggaaagaggaagctgatgctgcgaaaagatcctttgctggtgattcctgcagt
gatcacattgcccttctcaaagcctttgaaggttggaaggatgcaaaaagttacgggaga
gaaagggcattctgttgggagaattttttatcaccaattacccttcagatgatggaggac
atgagaaatcaatttctggatctactgtcagacattggcttcgtcgacaaatcccaggga
gctaaggtgtacaatagatacagtgatgatctggagatggtttgtgcaatcttatgtgct
gggctctacccaaatgtcgtgcagtgcaaaaggataggaaagcgtactgccttctacact
agagaagtaggtaaagttgacattcacccagcatctgtcaatgccgggctcttccttttt
ccactcccatacatggtttacagtgagaaggtgaagacaaccagcattttcatacgggac
tcgacaaatatatcagattatgctctgcttctctttggaggcaacctcattccaagcaaa
actggagagggtattgaaatgctcgatggatatcttcatttctcagcatcaaggagtgta
ttggaattgatacagaacttgagaagcaaactagacaagcttctccagaggaaaattgag
gaaccagggctggacatccatgcagaaggcaagggagtggttgctgctgttgaggagttg
ttacacagttag
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