Macadamia integrifolia (macadamia nut): 122087586
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Entry
122087586 CDS
T07436
Name
(RefSeq) probable U6 snRNA-associated Sm-like protein LSm4
KO
K12623
U6 snRNA-associated Sm-like protein LSm4
Organism
ming
Macadamia integrifolia (macadamia nut)
Pathway
ming03018
RNA degradation
ming03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ming00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122087586
09123 Folding, sorting and degradation
03018 RNA degradation
122087586
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ming03019
]
122087586
03041 Spliceosome [BR:
ming03041
]
122087586
Messenger RNA biogenesis [BR:
ming03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
122087586
mRNA degradation factors
5'-3' decay
Lsm complex
122087586
Spliceosome [BR:
ming03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
122087586
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
SM-ATX
Motif
Other DBs
NCBI-GeneID:
122087586
NCBI-ProteinID:
XP_042512700
LinkDB
All DBs
Position
2:11164485..11170906
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AA seq
150 aa
AA seq
DB search
MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY
IRGNTIKYLRVPDEVIDKVQEETKSRSDRRPPGVGRGRGRGREDGAGGRQPKGIGRGQDD
GGAKGMGGGRGRGGTGGKSGANRGGGRGRG
NT seq
453 nt
NT seq
+upstream
nt +downstream
nt
atgttgcctctttctctactgaagacggcacagggtcatcctatgttggtagaactgaag
aatggggagacctacaatgggcatttagtgaattgtgacacttggatgaacattcacctt
cgtgaagttatctgtacctcaaaggatggagacaggttttggcgaatgccagaatgttac
atccgtgggaatacaattaagtatcttcgagttccagatgaggtgattgataaagtacag
gaagaaaccaagagccgatcagataggaggcctcctggagtaggccgtggaaggggaaga
gggagagaggatggtgctggtgggaggcagccaaaaggcattgggcgtggccaagacgat
ggaggggctaaaggcatgggtggaggccgaggcaggggtggtactggtggcaagagtggt
gccaacagaggtggaggtcgtggtcgtggctga
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