Macadamia integrifolia (macadamia nut): 122087918
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Entry
122087918 CDS
T07436
Name
(RefSeq) zinc finger CCCH domain-containing protein 40-like
KO
K12872
pre-mRNA-splicing factor RBM22/SLT11
Organism
ming
Macadamia integrifolia (macadamia nut)
Pathway
ming03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ming00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122087918
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ming03041
]
122087918
Spliceosome [BR:
ming03041
]
Complex B
Other components
Prp19-related factors
122087918
Complex C
122087918
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
STL11_N
RRM_1
zf-CCCH_RBM22
Torus
zf_CCCH_4
zf-CCCH_2
zf-CCCH_12
zf-CCCH
zf-CCCH_3
RRM_YTH1
zf-CCCH_4
zf-CCCH_10
RRM_occluded
RRM_3
zf-CCCH_PARP12
Motif
Other DBs
NCBI-GeneID:
122087918
NCBI-ProteinID:
XP_042512987
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All DBs
Position
2:2554567..2563927
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AA seq
478 aa
AA seq
DB search
MAHRFLRNLEADGWERSDFPIICESCLGDNPYVRMTKADYDKECKICTRPFTVFRWRPGR
DARFKKTEVCQTCSKLKNVCQVCLLDLEYGLPVQVRDTALAINSNDAIPKSDVNREYFAE
EHDRRARAGIDYESSYGKVRPNDTILKLQRTTPYYKRNRAHVCSFYVRGECTRGAECPYR
HEMPVTGELSQQNIKDRYYGVNDPVAMKLLNKAGEMSSLMAPEDESIKTLYVGGLDARVT
EQDLRDNFYAHGEIESVRMVLQRACAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMWGK
PQAPKPESENPDDEAVRQQGAVAHGGLLPRQVISQQQNQPPPPPPGALDQQQPHPVHYFN
IPPPLPPERTFYPSMDPQRMGAVIQSQEGAGSGSSGSGENKSGPEKPQQGGQHYPYQGMP
PQPGHYPQFYPPYGYMPPPPPPQYHYPPPYQSSVPPPPPPPAAQHYQPAGPPGSSQHQ
NT seq
1437 nt
NT seq
+upstream
nt +downstream
nt
atggcgcataggtttctaaggaatctggaggccgatggttgggaacgttctgatttcccc
atcatttgcgaatcttgtcttggcgacaatccctacgttcgaatgactaaagcggattat
gataaggaatgcaagatctgtacgcggccattcacagtttttaggtggaggccaggtcgt
gatgcgagatttaaaaagacggaggtctgccagacctgcagcaagctgaaaaatgtctgc
caagtttgtctactggaccttgagtatgggttgccggttcaggttcgagatactgcgctg
gctatcaactcgaatgatgctatcccaaaaagtgatgtcaacagggagtactttgctgag
gagcatgaccgcagggctcgggctggcatagactacgaatcctcatatggaaaggtgcgg
ccaaatgacactatattaaagcttcagagaacaacaccgtattataagagaaaccgggca
cacgtttgcagtttttatgtacggggtgaatgcacgagaggtgctgagtgtccatatcgg
catgaaatgcctgtaactggcgagttatcacaacaaaatattaaagatcgttactatgga
gttaatgatccagttgccatgaagcttctgaataaagcaggtgaaatgtcatcattaatg
gcccctgaagatgaaagcattaagaccctctacgttggtggtcttgatgctagggtaact
gagcaggatctgagggacaacttctatgcacatggtgagattgaatctgtaaggatggta
ctccagcgggcatgtgcctttgtaacctatactactagggaaggtgcagaaaaggcagca
gaagaactctcaaataagctagtcatcaagggtctgaggctgaagcttatgtgggggaag
ccccaggctccaaaaccagagtcagaaaaccctgacgatgaggcggtgagacagcagggg
gctgtggcccatggtggtttgctgccaaggcaagtgatatctcaacagcagaatcaacca
ccaccaccaccaccaggggctttggatcaacagcaaccccaccctgtacactacttcaat
attccacctccactcccacctgagaggaccttttatccatcaatggatcctcaaaggatg
ggagcagttatccaatcacaagaaggggcgggcagtggctcaagtgggtcaggtgagaac
aaatcaggtccagaaaagccacaacagggaggacagcattatccctaccaaggtatgcca
ccacagccaggccattatccacagttctatccaccttatgggtacatgcccccaccgccg
ccaccacaatatcattatcctccaccatatcagtcttctgtgcccccaccaccaccaccc
ccagcagctcagcattatcagccagccggacctccaggatcttcgcagcaccagtga
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