Macadamia integrifolia (macadamia nut): 122088269
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Entry
122088269 CDS
T07436
Name
(RefSeq) protein TRANSPARENT TESTA GLABRA 1-like
KO
K11805
DDB1- and CUL4-associated factor 7
Organism
ming
Macadamia integrifolia (macadamia nut)
Pathway
ming03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
ming00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
122088269
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ming04121
]
122088269
03036 Chromosome and associated proteins [BR:
ming03036
]
122088269
Ubiquitin system [BR:
ming04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
122088269
Chromosome and associated proteins [BR:
ming03036
]
Eukaryotic type
Histone modification proteins
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.3/1.5)
122088269
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_THOC3
Beta-prop_WDR5
WD40_CDC20-Fz
WD40_Prp19
Beta-prop_CAF1B_HIR1
Beta-prop_WDR3_1st
WD40
Beta-prop_EIPR1
WD40_Gbeta
WD40_WDHD1_1st
Beta-prop_RIG_2nd
Beta-prop_TEP1_2nd
Beta-prop_Aladin
Beta-prop_WDR36-Utp21_2nd
Beta-prop_WDR3_2nd
WD40_MABP1-WDR62_2nd
WDR55
Beta-prop_EML_2
Beta-prop_WDR41
EIF3I
Beta-prop_IFT140_1st
Beta-prop_WDR36-Utp21_1st
ANAPC4_WD40
Beta-prop_WDR90_POC16_2nd
MIOS_WD40
WD40_RFWD3
Beta-prop_Vps41
Motif
Other DBs
NCBI-GeneID:
122088269
NCBI-ProteinID:
XP_042513402
LinkDB
All DBs
Position
9:14373586..14375277
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AA seq
339 aa
AA seq
DB search
MENSTTQESHLRSDNFFTYDSPYPIYAMAFSSSPSPSSEKTHRIAVGSFLEEYNNKVDIV
SFDDETLTFRTNPNLSFDHPYPPTKLMFHPLRNSSEILASTGDYLRLWEVRDNSIEPRSV
FNNCKTSEFCAPLTSFDWNELEPRRIGTSSIDTTCTIWDIERGVVETQLIAHDKEVYDIA
WGEAGVFASVSADGSVRMFDLRDKEHSTIIYESPLPDTPLLRLAWNKQDLRYMATILMDS
NKVVILDIRSPTMPVAELERHQASVNAIAWAPQSCRHICSASDDTQALIWELPTVAGPSG
IDPILAYSAGSEINQLQWSAAQPDWIAISFASKMQLLKV
NT seq
1020 nt
NT seq
+upstream
nt +downstream
nt
atggagaactcgaccacccaagaatcccatctcaggtcggataatttcttcacgtacgac
tcgccgtacccaatctatgcgatggccttctcttcttctccatccccctcttccgaaaaa
acccaccgtatcgccgtcggtagcttcttggaagagtacaacaacaaagtcgacatcgtc
tccttcgacgatgaaaccctaactttcagaaccaatcccaatctctctttcgaccatcct
taccccccgaccaagctcatgttccaccccctacggaactcttccgagattctggcctcc
accggggattatcttcgactctgggaagttcgtgacaattcgattgagcccagatctgtt
ttcaacaactgcaagaccagcgagttctgcgccccgcttacttcgttcgattggaacgaa
ttggagccccggaggattggtacttcgagcatagatacaacctgcacgatttgggacatc
gaaagaggcgtcgtcgagacgcaacttatcgcgcacgataaggaggtctacgacatcgcc
tggggtgaggccggggtgtttgcttccgtttcggctgatgggtccgttcggatgtttgac
ttgagggataaggagcactccacgattatctacgagagccctcttcctgatacgccgctg
cttagattggcgtggaacaagcaggacctgaggtacatggccaccatcttgatggatagc
aataaggtggtgattttggatattcgttcaccaaccatgccggtcgctgagttggaaagg
caccaggcgagcgtcaatgccattgcctgggcaccgcagagttgccgacacatctgctct
gcgagtgatgacacgcaggctctcatttgggagctgcccacagttgccggtccaagcggt
atcgatcccattctggcatattccgcggggtccgagattaaccagctgcagtggtcggca
gctcagcctgattggattgccatttcattcgcctccaaaatgcagttgctcaaggtttga
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