Macadamia integrifolia (macadamia nut): 122088426
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Entry
122088426 CDS
T07436
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH6-like
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
ming
Macadamia integrifolia (macadamia nut)
Pathway
ming03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ming00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
122088426
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ming03019
]
122088426
03012 Translation factors [BR:
ming03012
]
122088426
Enzymes [BR:
ming01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
122088426
Messenger RNA biogenesis [BR:
ming03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
122088426
Translation factors [BR:
ming03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
122088426
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
R3H
HA2_C
DEAD
AAA_22
nSTAND3
HA2_N
ATPase
AAA_23
AAA_19
Ank_2
AAA_25
AAA_16
Rad17
T2SSE
Ank_5
NACHT
AAA_7
ABC_tran
Motif
Other DBs
NCBI-GeneID:
122088426
NCBI-ProteinID:
XP_042513629
LinkDB
All DBs
Position
9:7715095..7761902
Genome browser
AA seq
1302 aa
AA seq
DB search
MVKGKKGWNKGGQMNEGQYKENKAHKGNNTVTETTRVRISKILNEFFEGNDEVYTFEAGL
SNVERAAVHELCRKMGMTSRSSGRGNERRVTVHRRRKKNNNGVKGNENLTYLTFSEETKS
VLQNLFTRFPPDEREMSEEKNRDVKAHKIHWGKDNSFSKPSMNKFEIAKKVKSLASRMEK
DSQMRKIAEEKSKLPITSFKDVITSTVESHQVVLISGETGCGKTTQVPQFLLDYCWGKSE
ACKIVCTQPRRISAISVAERIACERGENVGDSVGYKIRLESKGGKNSSIMFCTNGVILRV
LVGKGKGTNSSREEASIDTLNDLLEITHIIVDEIHERDRFSDFMLAILRDLLPSCPHLRL
ILMSATLDAERFSQYFGGCPIIRVQGFTYPVKVFYLEDVLSILKSTEDNHLDSALVTTEL
TAEERVTLDEAINLAWANDEFDPLLELVSSEATPKICNYQHSLTGVSPLMVLAGKGRVGD
VFMLLSFGADCSLCAKDGTTALQWAKRENQGEAAEMIKQHIENGLTQSAEQQQLIEKYLA
TVDPERIDVVLVEKLLRKICMDSKEGAILVFLPGWDDINKTLERLLASPFFKDSSKFVII
SLHSMVPSAEQKKVFRHPPAGCRKIILSTNIAETAVTIDDVVYVIDSGLMKEKSYDPYNN
VSTLHSSWVSKASAKQRQGRAGRCQPGICYHLFSKTRAASLQDFQVPEIKRMPIEELCLQ
VKLIDPNCRIVDFLDKTLDPPVLESIRNAIVVLQDIGALSQDEGLTELGEKLGSLPVHPS
ISRMLFFSIMMNCLDPALTLACASDLKEPFVLPMAPDEKNRAAAAKAELASLYGGHSDHF
MVVAAFDCWKRAKEKGQERKFCSQYFVSSSVMSMLSALRKQLQHELIRNGFIPEDTSSCS
LNARDPGILHAVLVAGLYPMVGRMLPPIGRGQKAVVETASGAKVRLHPHSSNFKLSLDKS
NSRPLVIYDEITRGDGGLYIKSCTVVGPYPLLLLATELVVAPSKQNEDEESDEDAGASSG
DEDEMEMRTLSAEERRERIMSSPDNIVSVVVDRWLTFEATALDVAQIYCLRERLAAAILF
KVKHPREVLPPDLGASVYAIACFLSYDGPSGISLPSESIESLTLMVNAARINKEAAGKKV
QSHGQGGSNVMVPNGRSSFLRSLMDDDNNRLKTVSINHKPKRPAPSYTRQNEPQPPLLPP
VTTMEYLNIPPNHRNPQARVHNNVSTHQNEPHPQSLAPGATNAYLTVTPMVSPYQDFPVA
TTPYLNAQSSQSPAGYGSGRSGLDVQRGGSFKRKRGTRPQRQ
NT seq
3909 nt
NT seq
+upstream
nt +downstream
nt
atggtgaaaggtaagaaaggatggaacaaaggaggacagatgaatgaagggcaatacaaa
gaaaacaaggctcataagggaaacaataccgttactgagaccacccgggttcgaatatcc
aagatattgaatgaattttttgaaggaaatgatgaagtgtatacgttcgaagccggcctc
agcaatgttgaacgtgctgcggtgcatgaattgtgtcggaaaatgggtatgacctcaaga
agttctgggcgtggcaatgagcggcgtgttaccgtccacagaaggaggaagaaaaataat
aatggtgtaaaggggaatgaaaatctcacctatttaactttttcagaagagacgaaatca
gttttacagaatctatttacacgctttcctcctgacgaaagagagatgagtgaggaaaag
aaccgggatgtaaaggctcacaagatacactgggggaaagataatagtttcagcaaacca
tcaatgaacaagttcgaaattgcaaagaaggtgaaatcattggcttctaggatggaaaag
gactcacagatgagaaagattgctgaagagaagtcaaagcttccaattacatctttcaag
gatgtcattacttcgacagtggaatctcaccaggttgtgctcatatctggtgagactggc
tgtgggaaaactacgcaggttccacaatttcttctggactattgctggggtaagagtgag
gcatgcaagattgtgtgtacccaacccaggcgtatatcagcaatatcagttgcggagaga
attgcttgtgaaagaggagaaaatgttggagatagtgttggatacaagataaggctggag
tcgaaaggtgggaagaactcatctattatgttttgcacgaatggtgttattttaagggta
ctggttggcaaaggcaaaggcactaattcatcaagggaagaggcttcaattgatacgttg
aatgatttattagaaataacccacatcattgtggatgaaattcatgaaagggatcggttc
tccgattttatgctagcaattctcagagatttactcccttcatgtcctcatctacgattg
atacttatgagtgctactcttgatgctgaacggttttcacaatattttggtggctgccca
attatccgagtccaaggattcacctatccggtcaaggttttctacttggaggatgtactt
tctatcttgaaatcaacagaggataatcatcttgattctgctttagtgactacagagctg
acagcggaggagagggttaccctggatgaagctatcaacttggcatgggcgaatgatgag
tttgatcctctgctagaactagtttcctctgaggcaactccaaaaatatgtaattaccaa
cattctttgactggggtatcaccactgatggtgcttgctgggaaaggtagagtaggtgat
gttttcatgctcctttcatttggtgcggactgctctctatgtgccaaggatgggacaact
gcattgcagtgggcaaaacgagaaaaccagggtgaagctgctgaaatgatcaaacagcac
attgagaatggtcttacccagtctgcagaacagcagcagctcattgaaaaatatcttgct
actgtagatcctgaacgcattgatgttgttcttgtagagaaattgttaaggaaaatatgt
atggactcaaaggaaggagctatacttgttttccttccaggatgggatgatataaataaa
acactggagaggttacttgcttccccattttttaaggactcctcaaagtttgtgataata
tctcttcattctatggttccgtctgcagagcagaaaaaggtttttaggcatccaccagct
ggttgccgtaaaatcattctttctactaatattgctgagacagcagtcaccattgatgat
gttgtttatgttatagacagtggcctgatgaaagagaaaagttatgatccatacaataat
gtatcaacactgcattcatcttgggtttccaaagctagtgcaaagcagcgacagggacgt
gctggccgctgccagcctggaatatgttaccatttattctccaaaactcgagcagcatct
ctgcaagatttccaagttcctgaaatcaagcggatgccaattgaggaactgtgtctgcag
gtgaagttgattgatccaaattgcagaatagtagatttcttagataaaacattggaccct
ccagttcttgaatccatacgaaatgctattgtagttcttcaagatattggggccttgtca
caggatgaagggcttacggaactaggagagaaacttggctctctaccggttcatccatca
attagcaggatgcttttcttttctataatgatgaattgccttgacccagctttgacacta
gcgtgtgcatcagaccttaaagaaccctttgttttgcctatggctccagatgaaaagaat
agagctgcagctgccaaggctgagcttgcctcattgtatggtgggcatagtgaccatttt
atggttgttgcagcatttgactgctggaaacgtgcaaaggagaaaggtcaagaaaggaag
ttctgttctcagtacttcgtctcttcaagtgtcatgagtatgctgtctgccttgcgtaag
cagctgcagcatgagctgatccggaatggctttatccctgaagatacatcaagttgtagc
ctaaatgcaagggatccaggaatacttcatgcagtccttgttgcaggtttgtatccaatg
gtggggagaatgcttccaccaattggacgtggacagaaggctgtggtggagacagctagt
ggtgctaaggtccgcttgcaccctcactcctccaattttaaactgtcactggataaatcc
aacagtcgtcccctggtcatatatgatgagataactcgaggtgatggtggcttgtacata
aagagttgtactgttgtgggaccataccctttactgttgcttgcaacagaattggttgtt
gctccttcaaagcagaatgaagatgaggagagtgatgaagatgctggtgcatccagtgga
gatgaagatgaaatggagatgcgtacattatctgctgaagaacgcagagagagaataatg
tcatctcccgataatattgtttccgttgttgttgatcggtggcttacattcgaggctacg
gcacttgatgttgcccagatttactgcttgagggagcgattagcagcagcaatcttgttc
aaagtaaagcatccacgggaagttctgcctccagatcttggggcatctgtatatgcgatt
gcctgctttctgtcgtatgatgggccaagtggtatctcattaccttcagaatctattgag
tcattgacattgatggtcaatgcagctagaatcaacaaagaagccgcagggaagaaggtc
caatctcatgggcaagggggaagcaatgtgatggtacctaatggtagaagtagtttcctg
aggtcattgatggatgatgacaacaatcgccttaaaaccgtatccattaatcacaaaccc
aagagacctgcacctagttacacacgtcaaaatgagccacaaccaccactactgccccca
gtcactacaatggaatatcttaacattccacccaatcatcgcaatccccaggcacgtgtg
cataacaatgtcagtacacatcaaaatgagccacatccacaatcattggccccaggagct
acaaacgcatatttgacagttaccccaatggttagcccatatcaggacttcccagtagct
acaaccccatacctaaatgcccaatcatcacagagtccagctggatatggttcaggtagg
tctgggctggatgtacaaagagggggttcttttaagcgtaagcgtgggaccagaccacaa
cggcaatga
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integrated database retrieval system
