Macadamia integrifolia (macadamia nut): 122088485
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Entry
122088485 CDS
T07436
Name
(RefSeq) DNA repair protein RAD50 isoform X1
KO
K10866
DNA repair protein RAD50 [EC:3.6.-.-]
Organism
ming
Macadamia integrifolia (macadamia nut)
Pathway
ming03440
Homologous recombination
ming03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
ming00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
122088485
03450 Non-homologous end-joining
122088485
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ming03032
]
122088485
03400 DNA repair and recombination proteins [BR:
ming03400
]
122088485
DNA replication proteins [BR:
ming03032
]
Eukaryotic type
DNA Replication Termination Factors
MRN complex
122088485
DNA repair and recombination proteins [BR:
ming03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
MRN(MRX) complex
122088485
BRCA1-C complex
122088485
NHEJ (non-homologous end-joining)
MRX complex
122088485
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
AAA_15
AAA_21
SMC_N
Rad50_zn_hook
SbcC_Walker_B
AAA_29
DUF3782
ABC_tran
AAA_16
AAA_22
Motif
Other DBs
NCBI-GeneID:
122088485
NCBI-ProteinID:
XP_042513698
LinkDB
All DBs
Position
9:29043633..29103021
Genome browser
AA seq
1316 aa
AA seq
DB search
MSTIDKMLIKGIRSFDPENKHVITFFKPLTLIVGPNGAGKTTIIECLKLSCTGELPPNAR
SGQSFIHDPKVAGETETKAQIKLRFKTAAGKDVVCVRSFQLTQKASKMEYKAIESVLQTI
NPHTGEKVCLSYRCADMDREIPALMGISKAILENVIFVHQDEANWPLQDPSTLKKKFDDI
FSATRYTKALEVIKKLHKEQAQEIKTYKLKLENLQTLKDAAYKLRENIAQNEESSESLKA
QMHDLERNVQSLEAKIHHAEAMLEELKNLQDQISKKTGERNTLFKQEQDQYAALEEENED
TDEELKEWQTKFEERIALLETKIGKLERETHDTEERSSFLLDTSTKSNQEIGKLQNEAEA
HISLRQKQDLTIQRIFEKHNLGSLPSAPFSYEVSCNLINRIKMRLMDLERDLQDKKKSNE
VELKALWDSYDAANKHFNGLELQKHNKIEAKEGILSSIKKTENARDLEEQQLFNFNLSHI
DEREKKLQMEYERKGLEFEERKFDDNIQQLLTEIFSLGQKIKALNQEKDFMARDSDNRVR
LNVKKEELETARKKHRKIIDEHKDKIRRVLKGRLPLDKDLKKEVTQALGALKKEFSDLES
KYLEADKEVKVGKMKIEDVESSLSKFQKEMSAKKKFIESKVQSLYQQSKDIDSFLQLFND
AKEKRDVMKSKHNIADGMRQMFDPFERVARAHHICPCCERSFTPEEEDEFVKKQRVKATS
SAEHMKVLAVESANADSLFQQFDKLRMVYEEYIKLGRETIPQTQKTLHQLREDLDQKSQA
LDDVLGVLAHIKAEKDLVESLVEPVGSADTLFHEMQNLQKVVDDLEYTLDARGEGVKSVE
EMQSQLNTLQSRRDSLDYEVQKLRDEKDSMRSDLSNVGMRWGNAREEKLRAANILNSIKK
AEEELERLVEEKNQVDLEEKHLDEALIISLKEKDRLYHEYEAMKTKLDYEYDSLAELKRS
YNTEVEKLLECASQIKEYNDSKKGERLKELQEKLLVFESQLQNCKARKHEISVELDKSKE
LRRNQEKLKRNIDDNLKYRKTKAELDVCTCEIESLEDKMLKIGGFSAFEANKKKYVKERE
RLLEELNKCRGTLSVYQKNISDHKSELRQAKYNDIDKRYFNQLIQLKTTEMANKDLDRYY
NALDKALMRFHTMKMEEINKIIRELWQQTYRGQDIDYISIHSDSEGSGTRSYSYRVLMQT
GDTELEMRGRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDCPNAESLAAALL
RIMEDRKNQENFQLIVITHDERFAQLIGQRQHAERYYRVAKDEFQHSIIEAQEIFD
NT seq
3951 nt
NT seq
+upstream
nt +downstream
nt
atgagcactattgataaaatgctgattaaaggtatccgtagcttcgatccggagaacaag
catgtcatcaccttcttcaaacccctaaccctaattgtcggccccaacggcgccggcaaa
acgaccataatcgaatgcttgaagctttcttgcacgggagagttgcctcccaatgcgagg
tctggtcagagtttcatccacgaccccaaggttgctggggagacggaaacgaaagcgcag
attaagcttcgatttaagacggcggccgggaaggatgtggtgtgcgtaaggtctttccag
ttgactcagaaggcgtctaaaatggagtacaaggcaattgagagcgttctacagactata
aacccacataccggggagaaggtttgcctcagctatagatgcgctgacatggacagggaa
attcctgctctaatgggtatttcaaaggctattttggaaaatgttatatttgtccatcaa
gatgaggctaactggccattgcaagatccttcaacattaaaaaagaagtttgatgatatc
ttctctgctacacgatacacaaaagccttggaagtcataaaaaagcttcacaaggagcag
gctcaagagataaaaacatacaagctgaagctggagaatcttcaaaccttgaaagatgct
gcatataagcttcgagaaaatattgctcagaatgaagaaagttcggagtctctaaaagct
caaatgcatgatctagagagaaatgtacaaagtttggaggctaagatccaccatgcagaa
gcaatgctagaagagttgaagaacctacaagatcagatatcgaaaaaaactggtgaaaga
aacacgttatttaagcaagagcaggatcaatatgctgctcttgaggaggaaaatgaagac
actgacgaggaattaaaggaatggcaaaccaagtttgaagaaaggattgcactattagag
accaaaattggcaagttagaaagagagacgcatgacacagaggaaagaagttcttttctg
ttggatacaagtactaaatccaaccaggagatcggcaaacttcaaaatgaagctgaggct
catatttcattgaggcaaaagcaggatttaaccattcaaaggatatttgaaaagcataat
ttagggtctcttccaagtgcaccttttagctatgaagtttcttgcaacctcataaatcga
ataaagatgagattgatggatcttgagagggatttgcaggataaaaagaaatcaaatgaa
gtagaactcaaggcattgtgggacagttatgatgctgcaaataaacatttcaatggatta
gaacttcagaagcataataaaatcgaagccaaggaaggaatactgagttccattaagaaa
acggagaatgcccgggacctggaggaacaacaacttttcaactttaatctctctcatatt
gatgaaagggaaaagaaactgcaaatggagtatgaaagaaagggattggaatttgaggaa
agaaaatttgatgataacattcagcagttgttaactgaaatatttagcttaggacaaaaa
attaaagctctgaatcaggagaaggacttcatggcacgtgattcggacaatagagttaga
ctgaatgtgaagaaggaggaattggaaactgccaggaaaaaacataggaagataattgat
gaacacaaggataaaatccggagagtgctgaaaggaaggcttcctttggacaaggatctg
aagaaagaagtcacccaagccctaggggccctcaaaaaggagttcagtgatttggaatca
aaataccttgaagcagataaagaagtgaaagtggggaaaatgaaaatagaagatgttgaa
agttccttatccaagtttcaaaaggaaatgagtgcaaagaaaaagtttattgagtcaaaa
gtccagtctttgtatcagcagtcaaaagacattgattctttccttcaacttttcaatgac
gctaaggagaaaagagacgttatgaaaagtaaacacaacattgcagatggcatgaggcaa
atgtttgatccttttgaaagagttgcacgtgcacatcatatttgtccctgctgtgagcga
tctttcacccctgaagaggaggatgagtttgttaagaagcaaagggttaaagcaacaagt
tctgcagagcatatgaaagttttggccgtggaatcagcaaatgctgattcacttttccag
caatttgacaagcttcgaatggtatatgaggaatacattaaacttggcagggaaactatc
cctcagacacagaaaactttgcaccaactaagagaagatttggaccagaagtctcaggca
ctcgatgatgttttgggtgttttagctcatattaaagcggagaaggacttggtagagagt
ttggtagaaccagtaggatctgctgacactctttttcatgagatgcaaaatttgcaaaaa
gtagttgatgatttagaatatacacttgatgctcgaggagaaggtgtaaaatctgtagag
gaaatgcagtctcagttgaatacattgcagagcaggagggatagtctggactatgaagtg
cagaagttaagggatgaaaaggattccatgaggagtgatttatcaaatgttggaatgcgg
tggggaaatgcaagggaggagaaactgagagcagctaacattttgaatagcattaaaaaa
gcagaagaggaacttgagcgtttggtggaggaaaagaatcaagtagaccttgaagagaag
catttggatgaggctctcattatttcattgaaggagaaagatagattgtatcatgaatat
gaggcaatgaaaacaaaactcgactatgaatatgattcactggccgaacttaagagaagt
tacaacactgaagtagagaaacttctggaatgtgcttcccagattaaagagtataatgat
tcaaagaaaggggagaggcttaaggagttgcaagaaaaactattggtatttgagtctcaa
cttcaaaattgtaaggccagaaaacatgaaatttccgttgagttggacaaaagtaaagag
ttgaggcggaatcaagagaaattaaaacgaaatattgatgacaacttgaagtatcggaag
acaaaggctgaactggatgtatgtacatgtgaaattgaatcacttgaagataaaatgcta
aaaattggtggattttccgccttcgaagctaacaaaaagaagtatgtgaaggaaagagaa
agacttcttgaagagttgaacaagtgtcgtggaactctgtctgtatatcagaagaacatt
tcagatcataaatctgagcttagacaagctaaatacaatgatattgacaagcggtacttt
aatcagctgatccagcttaagacaaccgagatggcgaacaaggacctggacagatactac
aatgctcttgataaagcactaatgcgcttccacaccatgaagatggaggaaataaataaa
attatcagggagctgtggcagcaaacttacaggggtcaggatatagattatataagtatt
cattcggactctgaaggttctgggactcgatcttatagttaccgggttctcatgcagact
ggtgatactgagctggaaatgcgaggaagatgtagtgctggtcagaaggtccttgcttca
cttataatccggttggcattagctgaaacgttttgtctcaactgtggaatactggccctg
gatgaaccaacaacaaacttggattgcccaaatgctgagagccttgcagcagctctcttg
agaatcatggaggatagaaaaaaccaggagaatttccaactcatagtaattacacatgat
gagcggtttgctcaactgattggtcaacgccagcatgcagaacgatattatcgtgttgcg
aaggatgaatttcagcatagtatcattgaagcccaggagatattcgactga
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integrated database retrieval system
