Macadamia integrifolia (macadamia nut): 122088539
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Entry
122088539 CDS
T07436
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 11-like
KO
K11594
ATP-dependent RNA helicase DDX3X [EC:
5.6.2.7
]
Organism
ming
Macadamia integrifolia (macadamia nut)
Brite
KEGG Orthology (KO) [BR:
ming00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ming03019
]
122088539
03041 Spliceosome [BR:
ming03041
]
122088539
03036 Chromosome and associated proteins [BR:
ming03036
]
122088539
Enzymes [BR:
ming01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
122088539
Messenger RNA biogenesis [BR:
ming03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
122088539
mRNA cycle factors
Common to processing body (P body) and stress granule
122088539
Spliceosome [BR:
ming03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
122088539
Chromosome and associated proteins [BR:
ming03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
122088539
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
122088539
NCBI-ProteinID:
XP_042513769
LinkDB
All DBs
Position
9:673052..680730
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AA seq
635 aa
AA seq
DB search
MRTSWADSVSAAENTAAGSSANNGVGSTSRPARSSYVPPHLRNRPSLSDPPAALAPAPAP
APAAAFASSGSSFSNDRPGYSAALGGNRWGGPRSDLGRPGYSSGGRVGGGGGGGGGGGWN
NSRGGWDRGREREVNPFGEDVDTEPAFAEQENTGINFDAYEDIPVETSGENVPPPVNTFA
EIDLGQALNQNIRRCKYVKPTPVQRHAIPISLAGRDLMACAQTGSGKTAAFCFPIISGIM
NGQFSQRPRGARTVYPLALILSPTRELSCQINEEAKKFSYQTGVRVVVAYGGAPINQQLR
DLERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVEQMDMP
QRGDRQTMLFSATFPKEIQRLASDFLSGYIFLAVGRVGSSTDLIVQRVEFVQESDKRSHL
MDLLHAQRANGTHGKQSLTLVFVETKKGADALEHWLCMNSFPATTIHGDRTQQEREQALR
SFKSGVTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKTGLATAFF
NENNGSLARPLADLMQESNQEVPAWLTRYASRASYGGGRNRRSGGGRFGGRDFRRDASFN
RGGGGGTDYYGGGNSSGYGAAPGGYGGGGYASAWD
NT seq
1908 nt
NT seq
+upstream
nt +downstream
nt
atgcgaacttcgtgggcggattctgtctctgcagctgagaatacagctgctggatcctct
gctaataacggagttggtagcacttcacgtcctgcaagatcgtcctatgttcctccacat
ctccgtaaccggccatcattgtctgaccctcctgctgctcttgctcctgcacctgctcca
gctccagctgcagcatttgcatccagtggttcttcctttagcaatgatcgacctggttat
agtgctgctttgggtgggaaccgttggggtggtccaaggtctgatctagggcggcctggc
tacagcagcggtggccgcgttggtggtggtggtggtggtggtggtggtggtggttggaac
aacagtcgtggtggatgggatcgtggaagggaacgggaggtaaatccttttggagaggat
gtcgacaccgagccagcgtttgctgagcaggagaacactggcattaactttgatgcctac
gaagatattccagtggagaccagtggggagaatgtgccaccacctgtgaacacttttgct
gagattgacctgggccaagctctcaatcaaaatatacggaggtgcaaatatgttaaacca
acccctgtgcagcgacatgccattccaatttcccttgcggggagggacttgatggcttgt
gcacagactgggtctggcaagacagctgctttctgcttcccaattatcagtggaattatg
aatgggcagttttctcagagaccacgtggagcacgtacagtttacccacttgctcttatt
ctctcacccacaagggagctgtcttgccagataaatgaggaagctaagaaattttcctat
caaactggtgtcagagtggttgttgcttatggaggggcacccattaaccagcagctgcgg
gacttggagaggggtgttgatattcttgtggcaactcctggacggttagtagatttgttg
gagagggctagagtgtcacttcagatgatcagatatttggctcttgacgaggctgatcga
atgttggatatgggttttgaaccacaaattagaaagattgtggaacaaatggacatgcct
caacgaggtgacagacagacaatgctcttcagtgctactttccccaaagaaatacagaga
ttggcctcggactttctttccggttacattttcctagctgttggaagggttggttcaagt
actgatttgattgtccaaagagttgaatttgttcaagagtctgacaagaggagccacctc
atggaccttcttcacgcacagagggcgaatggaactcatggcaagcaatctctgactcta
gtttttgtggagacaaagaaaggagccgatgcgttggaacactggttatgtatgaatagt
ttcccggcaactactattcatggtgatagaacacagcaggaaagagagcaagcattgaga
tcatttaagagtggtgtaaccccaattttggtggcaactgatgtggcagcacgtggtctt
gatatacctcatgttgcgcatgtagtcaactttgatcttcccaatgacattgatgactat
gtccatcggataggacggacagggcgagcgggtaagacaggtttggccactgcctttttc
aatgaaaacaatggctcgttagctaggccattagcagatctgatgcaagaatcgaaccaa
gaagtacctgcgtggctcactcgttatgcatcccgagcttcatatggtggtggtaggaat
cggcgttctggtggaggccgttttggtgggcgtgatttccgtagagatgcatcatttaat
agaggtgggggtggtggtacagattactatggtggaggcaacagcagtggatatggggcc
gctcctggaggttacggcggtggcggctatgctagtgcatgggactag
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