Macadamia integrifolia (macadamia nut): 122089248
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Entry
122089248 CDS
T07436
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein PRP4-like protein
KO
K12662
U4/U6 small nuclear ribonucleoprotein PRP4
Organism
ming
Macadamia integrifolia (macadamia nut)
Pathway
ming03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ming00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122089248
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ming03041
]
122089248
Spliceosome [BR:
ming03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
122089248
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
Beta-prop_WDR5
WD40
Beta-prop_THOC3
Beta-prop_WDR3_1st
Beta-prop_WDR3_2nd
WD40_WDHD1_1st
WD40_Gbeta
WD40_CDC20-Fz
WDR55
EIF3I
Beta-prop_EML_2
Beta-prop_CAF1B_HIR1
Beta-prop_WDR36-Utp21_2nd
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_1st
Beta-prop_WDR36-Utp21_1st
Beta-prop_TEP1_C
Beta-prop_EML
Beta-prop_WDR75_1st
ANAPC4_WD40
Beta-prop_DCAF4
Beta-prop_Aladin
WDR90_beta-prop_4th
Beta-prop_WDR41
PRP4
Beta-prop_EIPR1
Beta-prop_WDR19_1st
WD40_RFWD3
NBCH_WD40
Beta-prop_IFT122_1st
Beta-prop_RIG_2nd
Beta-prop_SCAP
WD40_like
TPR_TRIP12_N
Motif
Other DBs
NCBI-GeneID:
122089248
NCBI-ProteinID:
XP_042514758
LinkDB
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Position
9:complement(5894721..5900947)
Genome browser
AA seq
589 aa
AA seq
DB search
MEEEENPNTSTSLSDPSTTDVLVNDPTSSPATNLPLVPPPVPTVPPVVVATPAPLPQPII
TPTMPPPIMPPIAPISSIPPPPVPRPLAPLPIRPPVIRPLVPQNTEANGSDSDSDHDTAH
GSSADYEISEESKQVRERQEKAMQELLMKRRAYALAVPTNDSAVRARLRRLGEPITFFGE
REMERRERLRMIMVKLETEGQLEKLLKAHEDEEAATAAAVGEGDAEGPQEYPFFTEGSRE
LLESRVYIAKYSIVKAALRLERERRRRNDPDEDLDAEMDSALKQAGTLVLDCSEIGDDRP
LSGCSFSRDGKLLATSALSGVAKLWGMPQVNKVTALKGHTERATDVAFSPVQNIIATASA
DRTARLWDTEGSVLRKFEGHLDRLARLAFHPSGKYLGTASFDKTWRLWDVDSGVELLLQE
GHSRSVYGICFHHDGSLVASCGLDALVRVWDLRTGRSILAFEGHVKPVLGISFSPNGYHL
ASGGEDNTCRIWDLRKKKSLYIIPAHSNLISQVKFEPQEGYFLATASYDMTAKVWSARDF
KPVKTLSGHESKVTSLDIVGEGHLVTVAHDRTIKLWSSRNEKENDMDVD
NT seq
1770 nt
NT seq
+upstream
nt +downstream
nt
atggaagaagaagaaaaccccaatacaagcacctctctttcagatccctctacaacagat
gtacttgttaatgatccgacttcatctccagccactaatcttcctcttgtgccacctcca
gtccccactgttcctcctgttgttgttgcaacaccagcaccgcttccccaacctataatt
acaccaacaatgccaccaccaattatgccacctatagctccaatatcctcaatacctcct
cccccagttccccgccctttggcaccacttcccattcgtccaccagtcatccgtcccctt
gtcccacaaaacactgaagcaaatggctctgattcggattcagaccatgatactgctcat
ggttcatctgcggattatgagatatcagaagagagtaaacaggtccgagagaggcaggaa
aaagcaatgcaggaacttctgatgaagcgacgtgcttatgctcttgctgtgcccactaat
gactcagctgtccgtgctcgtctccgtcggcttggtgagccaattacattttttggagaa
agggaaatggaaaggagggagaggttacggatgattatggtgaagcttgaaactgaagga
cagttggagaagttgttaaaggctcatgaggatgaggaggctgctactgctgcagcggtg
ggtgagggtgatgcagaagggcctcaagagtacccattttttactgaagggtcaagggaa
cttttagagtctcgagtttatattgctaagtattcgattgtgaaggctgccttgcggctt
gaacgtgagaggaggagaaggaatgatccagatgaagatcttgatgcagagatggattca
gctctgaaacaggcaggtaccttggtccttgactgcagcgaaattggtgatgatcgacca
ctctcggggtgttccttttctcgagatgggaagctacttgccaccagtgctttgagtgga
gttgctaaattgtggggcatgcctcaagtaaataaggtcactgctttaaagggtcacaca
gagcgtgcaaccgacgttgcattttctcctgtccaaaacattatagcaactgcttctgct
gatcggactgctaggttatgggacactgaaggttctgttcttaggaaatttgagggccat
ctggatcgtcttgcccgtctcgcattccatccatccgggaagtacttaggaacagctagc
tttgataagacttggaggttgtgggatgttgactctggtgttgagttgcttcttcaagaa
ggtcatagcaggagcgtttacgggatatgtttccaccatgatggatctttagtggcatcg
tgtggattagatgcacttgttcgagtatgggacctccgtactggaagaagcattcttgct
tttgaaggccatgttaagccggtcttaggaatcagcttttctcccaatgggtatcattta
gcctctggtggtgaggataatacctgccgaatctgggatttgagaaagaagaaatccttg
tacataataccagctcactcaaaccttatctcacaagtaaaatttgagccccaggaagga
tattttctggcaactgcttcatatgatatgacagctaaggtgtggtcagctcgagacttc
aaacctgtcaagacattatctggacatgaatcaaaagtcacatcattagatatagtggga
gaaggacatcttgtgacggtggcgcatgatcgaactatcaagctatggtcaagcagaaat
gagaaggaaaatgatatggatgttgattaa
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