Macadamia integrifolia (macadamia nut): 122089291
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Entry
122089291 CDS
T07436
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 20
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
ming
Macadamia integrifolia (macadamia nut)
Pathway
ming03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ming00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122089291
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ming03041
]
122089291
03009 Ribosome biogenesis [BR:
ming03009
]
122089291
Enzymes [BR:
ming01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
122089291
Spliceosome [BR:
ming03041
]
Complex A
U1 snRNP components
U1 related factors
122089291
Complex B
122089291
Ribosome biogenesis [BR:
ming03009
]
Eukaryotic type
Pre-60S particles
Helicases
122089291
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Motif
Other DBs
NCBI-GeneID:
122089291
NCBI-ProteinID:
XP_042514827
LinkDB
All DBs
Position
9:20804632..20830637
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AA seq
508 aa
AA seq
DB search
MSRYDSRSGDPGSYRDRRSDSGLGGGGGLAYGSGVGRSSSSSKREYDGASSPKKLDLDGL
PHFEKNFYIESPSVAAMTESEVDAYRQRRQITVEGKDVPKPVREFRDAGFPDYVMQEVIK
AGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVL
VLAPTRELAVQIQQEAAKFGASSKIKNTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDM
LESHHTNLRRVTYLVLDEADRMLDMGFDPQIRKIVSQIRPDRQTLYWSATWPKEVEQLAR
QFLYNPYKVIIGSADLKANHAIRQHVDIVSENQKYNKLVKLLDDIMDGSRILIFMDTKKG
CDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKFV
INYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELIKILEEAGQKVSPELAA
MGRGAPPPPSGHGGFRDRGRGFGGRPWS
NT seq
1527 nt
NT seq
+upstream
nt +downstream
nt
atgagccgctacgatagccgttccggcgaccctggttcgtatcgcgaccggagaagcgat
tccggtttgggaggaggtggaggtcttgcttacggaagcggcgtcggtcggtcttcgtct
tcgagcaagagggaatatgatggtgcgagctccccgaaaaagctggacttagatggcctc
ccccatttcgaaaagaatttctatatcgagtctccttctgtggcggctatgaccgagagt
gaagtcgatgcctaccgtcagcgcaggcagatcactgtcgagggcaaagacgtccccaaa
cctgtcagggaatttcgtgatgctgggtttccagattatgtcatgcaagaagttatcaag
gctggttttgttgaacctacccctattcaagctcaaggatggccgatggctttgaagggt
cgtgatcttattggcattgcagaaacaggatcgggaaagactcttgcttatctacttcct
gctattgttcatgttaatgcacagccatttttagctcctggagacggtcccattgtctta
gttctggctccgacccgtgaacttgctgttcagatacaacaagaagctgctaagtttggt
gcatcatcaaagattaagaatacctgtatttatggtggtgtcccaaagggacctcaagtc
cgtgatctgcaaaaaggtgttgaaattgttattgccactcctggaagactaattgatatg
ttggagtcccatcacaccaacttgcgaagggttacttaccttgttttggatgaggcagat
cgcatgctagatatgggttttgatcctcagataaggaaaattgtttctcagatacgccca
gaccgccagactttgtattggagtgctacttggcccaaggaggttgaacagcttgcgagg
cagttcctttataatccatacaaggtgattattggttctgctgatttgaaagctaaccat
gcgattcgccagcatgtggatatcgtttcagagaatcagaaatataacaagttggtaaag
cttctggacgacatcatggatggtagcaggatcctgatattcatggataccaagaaaggt
tgtgaccagatcaccagacagctccggatggatggttggcctgccctctcaatccatggg
gataagagtcaagcggagagggattgggtcctgtcagagttcaaagctggcaagagcccc
ataatgactgcaacagatgtagcagcgcgtggtttggatgtgaaggatgtgaaatttgtg
ataaattatgattttccggggtccctagaagattatgtgcaccgcattggtcgaacaggc
agagctggggcaaagggaacagcatatacattcttcactgctgcaaatgccagatttgcc
aaggaacttattaaaatccttgaggaggcaggacagaaagtcagtcctgaactagctgca
atgggacgtggagcgccaccacctccatcaggtcatgggggattccgtgaccgtgggaga
ggttttggtggccgcccatggagttaa
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