Macadamia integrifolia (macadamia nut): 122090504
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Entry
122090504 CDS
T07436
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH2
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
ming
Macadamia integrifolia (macadamia nut)
Pathway
ming03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ming00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122090504
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ming03041
]
122090504
03009 Ribosome biogenesis [BR:
ming03009
]
122090504
Enzymes [BR:
ming01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
122090504
Spliceosome [BR:
ming03041
]
Complex A
U2 snRNP components
U2 related factors
122090504
Complex B
122090504
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
122090504
Ribosome biogenesis [BR:
ming03009
]
Eukaryotic type
90S particles
Helicases
122090504
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
HA2_N
DEAD
Helicase_C
AAA_22
AAA_19
SRP54
ResIII
nSTAND3
ABC_tran
T2SSE
AAA_7
Motif
Other DBs
NCBI-GeneID:
122090504
NCBI-ProteinID:
XP_042516059
LinkDB
All DBs
Position
10:complement(30392995..30398342)
Genome browser
AA seq
717 aa
AA seq
DB search
MSTERRKKVSLFDVVDETSLSPNKAIANGGLMYNSAINRWNGRPYSQRYYEILEKRKTLP
VWLQKEEFLQALNVSQTLILVGETGSGKTTQIPQFVLDAVDLETSDKRKKTMVACTQPRR
VAAMSVSRRVAEEMDVTIGEEVGYSIRFEDCSSSKTVLKYLTDGMLLREAMTDPLLERYR
IIILDEAHERTLATDVLFGLLKEVLRNRPDLKLVVMSATLEAEKFQNYFNGAPLMKVPGR
LHPVEIFYTQEPEKDYLEAAIRTIVQIHMCEPPGDILVFLTGEEEIEDACRKITKEIANM
GDQVGPVKAVPLYSTLPPAMQQKIFDPAPPPLKEGGIPGRKIVVSTNIAETSLTIDGIVY
VIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQPGKCFRLYTEKSFNGDLL
PQTHPEILRSNLANTVLSLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLGALDDDGNL
TSLGEIMSEFPLDPQMSKMLVVSPEFNCSNEILSISAMLSVPNCFVRPREAQKAADEAKA
QFGHIDGDHLTLLNVYHAFKQNNEDPQWCYENFINHRALKSADNVRQQLVRIMARFNLKL
CSTDFSSRGYYINIRKAMLAGYFMQVAHLERAGHYLTVKDNQEVHLHPSHCLDHKPEWVI
YNEYVLTSREFIRTVTDVRGEWLVDIAPHYYDLANFPQCEAKRVLERLYKKRARENR
NT seq
2154 nt
NT seq
+upstream
nt +downstream
nt
atgtcaacagagaggagaaagaaggttagcttatttgatgtggtggacgaaacttctctc
tctccgaataaagctatagctaatggcggcctaatgtacaactcagccattaatagatgg
aacggccggccttactctcagagatactatgaaatattggagaagaggaagacacttcct
gtatggttgcaaaaggaagagtttttacaggctttgaatgttagccagaccttgatattg
gtaggagaaactggtagcgggaaaacaactcagattcctcagtttgttttggatgctgtt
gacttagaaacctctgacaaacgtaaaaagacgatggtagcctgcacacagcctcgtagg
gttgctgcaatgtcagtgtcccgtagagttgctgaagagatggatgtaacaattggagaa
gaagttggttacagcatccggtttgaagactgcagtagctcaaaaacagttctaaagtat
ttgacagatggtatgcttctaagagaagctatgacagatccccttcttgaacgttataga
attattatactggatgaggctcatgaaagaactttagcaacagatgttctatttgggctt
ctgaaagaagtattgagaaataggcctgatctgaaactcgtagtgatgagtgcaaccctt
gaggccgagaaatttcaaaattactttaatggtgcacctcttatgaaagttccaggaagg
cttcatccagtggagattttctacacacaagaacctgagaaggattaccttgaagccgca
attagaacaattgtgcagatacacatgtgtgagcctcctggtgacatccttgtttttctt
actggagaggaagagattgaagatgcctgccggaaaataacaaaagaaattgcaaatatg
ggtgaccaagtgggcccagtgaaagcagtgcctctgtattcgacacttcctccagctatg
cagcagaagatttttgaccctgctccaccaccactgaaggagggtggcattcctgggagg
aagattgtagtgtcaaccaacattgcagaaacttctttgactattgatggtattgtttac
gtcatagaccctgggttcgccaagcaaaaggtttataacccacgggtgcgagtggaatct
ttgctggtctccccaatatcaaaagcaagtgcgcatcagagatcagggcgtgccggaaga
actcaacctggaaaatgcttcagactctacactgagaaaagtttcaacggagatctcctg
ccacagactcaccctgagatactgcggtctaatctggcaaacacagttctgagcttgaag
aagcttggaattgatgatcttgtgcattttgattttatggaccctcctgctccggagaca
ttaatgcgggctctggaggtcttgaactacttgggtgcactggatgatgatgggaattta
accagtttgggggaaatcatgagtgaatttcctttggatcctcaaatgtcaaagatgctt
gttgttagtcctgaatttaactgttcaaatgaaatcctttctatctcagccatgctatca
gtacccaattgctttgtccggcctagggaggctcaaaaagctgcagacgaagcgaaagct
cagtttggccacattgatggagatcatctgacacttttgaatgtgtatcatgcattcaag
caaaacaatgaagatcctcaatggtgctatgaaaattttatcaatcatagggccctgaag
tctgctgataatgtcaggcaacagttggttcgcattatggcgaggttcaacctcaagtta
tgcagcacagatttcagcagccgtggctactatattaacataaggaaagctatgctggcc
gggtattttatgcaggttgctcaccttgaacgtgctggtcactatttgactgtgaaagac
aatcaggaagttcaccttcatccttctcactgcctggatcacaagccagagtgggttatc
tacaacgagtatgtgttaacaagtcgagaatttatccgtacagttactgacgttcgtggg
gaatggctggttgacatagctcctcactactatgaccttgccaatttcccccaatgtgag
gcaaagcgtgttcttgagaggctttacaagaagcgtgcgagggaaaatcgctga
DBGET
integrated database retrieval system
