Macadamia integrifolia (macadamia nut): 122093602
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Entry
122093602 CDS
T07436
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB2-like
KO
K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:
2.7.7.6
]
Organism
ming
Macadamia integrifolia (macadamia nut)
Pathway
ming03020
RNA polymerase
ming03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ming00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
122093602
09124 Replication and repair
03420 Nucleotide excision repair
122093602
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ming03021
]
122093602
03400 DNA repair and recombination proteins [BR:
ming03400
]
122093602
Enzymes [BR:
ming01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
122093602
Transcription machinery [BR:
ming03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
122093602
DNA repair and recombination proteins [BR:
ming03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
122093602
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_3
RNA_pol_Rpb2_4
RNA_pol_Rpb2_5
Motif
Other DBs
NCBI-GeneID:
122093602
NCBI-ProteinID:
XP_042519893
LinkDB
All DBs
Position
11:21338255..21350409
Genome browser
AA seq
1191 aa
AA seq
DB search
MSGEDNDHTIPDEEEEITQEDAWTVISAYFEEKGLVRQQLDSFDEFIQNSMQEIVDESAD
IEIQPVSQHNPGRQPDFLETIYKISFGQIYLSKPMMTESDGETTTLFPKAARLRNLTYSA
PLYVDVTKRIMKKGHDCEEVTETQEFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECP
YDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSSMFV
RMLSRASAKGGSSGQYIRATLPYVRTEIPIIIVFRALGFVADKDILEHICYDFSDTPMME
LLRPSLEEAFVIQSQQVALDYIGKRTNQVRVVTREMRIQYAKDILQKAMLPHVGVGEYCE
TKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLMKDVEKY
VQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANSAGTRAGVSQVLNRLTYASTL
SHLRRLNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAAN
PILDFLEEWSTENFEEISPAVIPQATKIFVNGCWVGIHRNPELLVTTLRQLRRQVDVNTE
VGVIRDINLKELRLYTDYGRCSRPLFIVDKQRLLIKKQDVRALQQRESPDEGGWHDLVAK
GFIEYIDTEEEETTMISMTINDLITARLHPEEAYSDTYTHCEIHPSLILGVCASIIPFPD
HNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAG
INSIVAISCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLIKEEFGRPNRE
NTMGMRHGSYDKLDDDGLALPGTRVSGEDVIIGKTTPIAQDESQGQASRYTRRDHSTSLR
HSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWT
VEGISPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKC
GYQMRGFETMYNGHTGRRLTSMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGR
SRDGGLRFGEMERDCMIAHGAAHFLKERLVDQSDAYRVHVCERCGLIAIANLKKNSFECR
GCKNKTDIVQVRIPYACKLLFQELMSMAIAPRMLTSELKAIKDGKKVVLNR
NT seq
3576 nt
NT seq
+upstream
nt +downstream
nt
atgtccggggaagacaatgatcatactattcccgacgaagaagaggagattacgcaggaa
gatgcgtggactgtcatcagtgcttacttcgaagagaaaggtctcgtgcgtcaacagctc
gattctttcgatgagtttatccagaacagcatgcaggaaatagttgatgagtctgctgat
attgagattcaaccagtgtctcagcataatcccggccgtcagcccgatttccttgagact
atatacaagatcagctttggacaaatatacttgagtaagccaatgatgacagaatcggat
ggggaaacgactactttgtttcccaaggctgcaaggttgaggaacctcacctattcggcc
cccttgtatgtggatgtcacaaaacgaatcatgaagaaagggcacgattgtgaagaagta
actgagacgcaagagttcactaaagtcttcattggaaaggttcctataatgctccggtca
agttattgtacattatatcagaattcagagaaagatctaacagagcttggggagtgccca
tatgatcagggtggatactttatcattaatggaagtgaaaaggttttgattgcgcaggag
aagatgagcacaaatcatgtgtacgtgtttaagaagaggcagcctaacaagtatgcctat
gtggctgaggtccgttcaatggcggaatctcagaacaggccgcccagcagtatgtttgtg
cggatgctttctcgggctagtgccaaagggggttcctctggacagtacattcgtgctacc
cttccatatgtccgaacagaaatcccaataattattgtatttagggccctaggatttgtt
gctgataaagatatattagagcacatatgctatgacttctctgacactccgatgatggag
ttgcttcggccgtccttggaagaagcatttgtgatccagagtcaacaggttgcattggat
tacattgggaagagaactaatcaagtgcgtgtcgtcacaagggaaatgaggattcagtat
gccaaagatatccttcagaaagcaatgcttcctcatgttggtgtcggagaatattgtgaa
acgaagaaggcttattattttggttacatcattcacaggcttctgctatgtgcacttggc
cggagggcagaagatgatagggatcattatggcaacaagaggctagaccttgctggacct
ttgcttggaggcctgttccgcatgttgttcagaaagttgatgaaggacgttgaaaagtat
gttcagaagtgtgttgataatgggaaggatgttaacttgcaatttgctataaaagcgaaa
acaattactagtggccttaaatattcccttgctacgggaaactggggacaggcaaattct
gctggtacaagagctggagtttcacaggttttgaaccgtttgacgtatgcgtctaccctg
tctcacttgcgaaggttaaactctcctattgggcgtgaagggaaattggcgaaacccagg
cagttgcacaattcccattgggggatgatgtgtcctgcagaaactccagaagggcaggct
tgtggacttgtgaagaatttggcgctaatggtgtacattactgtgggatcagcagcaaat
cccatacttgattttctagaggaatggagtacagaaaattttgaggaaatatcccctgcg
gttattccgcaagcgaccaaaatttttgtcaatggttgctgggttggcattcatcgtaat
cctgagcttttggtgacgacgttgagacagctgagaagacaggttgatgtcaatactgaa
gttggtgttatccgagatattaatttgaaagagcttcgactttatactgattatggccgt
tgtagccgtcccttgtttattgttgataaacaaaggctacttataaagaaacaagatgtc
cgggccttgcaacaaagggaatccccagatgagggtggctggcatgatcttgtggcaaaa
ggattcatagagtatatagacacagaagaagaagaaactaccatgatttccatgactatt
aatgatcttataactgcgaggctccatcctgaggaagcttattccgatacttatactcac
tgtgaaatccatccatcgttgattttgggtgtctgtgcatctattattccgtttcctgac
cataaccagtcccctcgtaatacttaccagtcggcaatgggcaaacaagccatggggatt
tatgtcacaaattaccaattgcgaatggatacactggcctatgtgctctattacccccag
aagcctcttgtaactactcgtgccatggagcacttgcacttcaggcagttgccagctgga
attaattctatcgttgcgatctcctgctattctggatataaccaagaagattctgttatc
atgaaccaatcttcaatagaccggggattcttccgatcattgttcttccggtcatacagg
gatgaggaaaagaagatgggaacattaattaaggaggaatttgggcgtccaaatagggaa
aatacaatggggatgcgacatggatcttatgataaattagacgatgatggtcttgccctt
cctggcacaagggtctcaggtgaagatgttattattggaaagacaactccaattgctcag
gatgaatctcaagggcaagcttcacggtacacacgccgtgatcatagcacaagtctaagg
cacagtgaaagtgggatggtagatcaggttctgttgacaacaaatgctgatggtttgagg
tttgtgaaagtaagaatgaggtccgtccgtatacctcagattggagacaagttcagcagt
cgacatggtcagaagggaacagttggtatgacatacacacaagaagacatgccatggact
gtggaaggaatttccccagatattattgtgaacccacatgctattccttctcgaatgacg
attggacagctcattgagtgcattatggggaaggttgctgctcacatggggaaggagggg
gatgccactccttttactgatgtcacagtggacaatatcagcaaagccctccacaaatgt
gggtatcagatgcgtggttttgagaccatgtacaatggtcatacaggccggaggttgact
tcgatgattttcctgggtccgacgtactatcagagactgaagcacatggtggatgataag
atccattcacgtgggcgtggtcccgtgcagattctcacaaggcagcctgctgaaggtcgg
tctcgagatggaggtctccgatttggtgagatggagcgagattgtatgattgctcatggg
gctgcacattttctcaaggagcggttggttgaccagagtgatgcctatagagttcatgtt
tgtgagcgttgtgggctgattgccattgccaacctaaaaaagaactcgtttgagtgtaga
ggttgcaagaacaagactgacattgttcaggttcgcataccttatgcatgtaagttgctt
tttcaagagctcatgtcgatggccattgccccgaggatgcttacaagtgaactgaaggca
atcaaagacgggaagaaagtggttttgaacagatga
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