Macadamia integrifolia (macadamia nut): 122093672
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Entry
122093672 CDS
T07436
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH7
KO
K12815
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16 [EC:
5.6.2.6
]
Organism
ming
Macadamia integrifolia (macadamia nut)
Pathway
ming03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ming00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122093672
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ming03041
]
122093672
Enzymes [BR:
ming01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
122093672
Spliceosome [BR:
ming03041
]
Complex C
Other components
Step II factors
122093672
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
HA2_N
AAA_22
AAA_19
Flavi_DEAD
SLFN-g3_helicase
AAA_30
T2SSE
AAA_24
nSTAND3
AAA_16
AAA_14
NB-ARC
ABC_tran
TMEM247
Motif
Other DBs
NCBI-GeneID:
122093672
NCBI-ProteinID:
XP_042519990
LinkDB
All DBs
Position
11:30208162..30224379
Genome browser
AA seq
1286 aa
AA seq
DB search
MSGGEGGPINLDQTTVTLEPDNISSGGLQVPGKDRVVFRPPERKSLLGLDVLADAKRGSK
GDGVFKVPREKSISVVASIDEDETAASSGLDEVGGSVSNSGRSHASRRYRETATDENSHS
ESNLTREGQGTDTTGTHHSYERRHSEVSTPSTGSTRNGPSQSPYRHDRDGRRSDKRDSRN
DSWSESRRLPNRHGDYSRDNYRGRETPSRHEYEQKYEREYGRKRSKYSNSSRRTPGRSDW
DDGRWEWEDTPHRDSRSWTDRQHRPSPSPMLVGTSPDARLVSPWLGGHTPHSSGPAASPW
DYVSPSPVPIRASGSSARSSNSYPGGRSSRPIYEDGEADKSPSAKEQSNEITEKMHLEME
YNSDRAWYDREEGNTMFDSDTSSFYLGDDASFQKKEAELAKRLVRKDGTRMTLAQSKKLS
QLAADNVQWEDRQLLRSGAVRGTEVQTEFEDEDERKVILLVHDTKPPFLDGRVVFTKQAD
PIMPLKDPTSDMAIISRKGSALVREIREKQSSNKSRQRFWELAGSKLGDILGVEKTAEQI
DADTAVVGEEGEVDFKEEAKFAQHMKEKGEAVSDFAKSKTLAQQRQYLPIYSVREELLQV
IRENQIIVVVGETGSGKTTQLTQYLHEDGYTTNGIVGCTQPRRVAAMSVAKRVSEEMKTE
LGDKVGYAIRFEDVTGANTIIKYMTDGVLLRETLKDSDLEKYRVIVMDEAHERSLSTDVL
FGILKRVVAQRRDFKLIVTSATLNAQKFSNFFGSVPIFNIPGRTFPVNILYSKTPCEDYV
EAAVKQAMAIHITSPPGDILIFMTGQDEIETTCYALAERMEQLVSSTKKGVPQLLILPIY
SQLPADLQAKIFQKAEDGARKCIVATNIAETSLTVDGIFYVIDTGYGKMKVYNPRMGMDA
LQVFPVSRAAADQRAGRAGRTGPGTCYRLYTDSAYQNEMLPNPVPEIQRTNLGNVVLLLK
SLKIENLLDFDFMDPPPQDNILNSMYQLWVLGALNNVGSLTDLGWKMVEFPLDPPLAKML
LMGEQLACLNEVLTVVSMLSVPSVFFRPKDRAEESDAAREKFFVPESDHLTLLNIYQQWK
ANQYRGDWCNDHFLQVKGLRKAREVRSQLLDILKALKIPLTSCGPDWDVVRKAICSAYFH
NAARLKGVGEYVNCRNGMPCHLHPSSALYGLGYTPDYVVYHELILTTKEYMQCATAVEPQ
WLAELGPMFFSVKDSDTSMLEHKKKQKEEKTAMEEEMENLRKSQAEEERENKKREKEKRV
SQQQQVSMPGIRQGTSTYLRPKKIGL
NT seq
3861 nt
NT seq
+upstream
nt +downstream
nt
atgtcaggaggtgaaggtggacctattaatctggatcaaacaacagtcacgttggaacct
gataatatcagtagcgggggattacaagttcctggaaaagatagagtggtgtttcgacct
cccgaaaggaagtctcttctaggattggatgttcttgctgatgcaaaaaggggatctaag
ggagatggtgtattcaaggttccgagggagaagtcaatttcagttgtggcttctatagac
gaagatgagacggctgcatcctcaggattggatgaagttgggggaagtgtatccaatagt
ggacgcagtcatgccagtcgtcgttatcgcgaaacagctacagatgagaattctcattca
gaaagtaatttgacacgggaaggacaaggaactgatacaactggaactcatcactcatat
gaacgtaggcattccgaagtttctacaccatctactggaagtacccggaatggtccatct
cagagtccttataggcatgatagggatggtcgtcgtagtgacaaaagagactctaggaat
gactcttggagtgagagcaggaggctgccgaatagacatggtgattatagtagagacaac
tatcgtggaagggaaacacctagtcgacatgaatatgaacagaagtatgaaagagaatat
ggaagaaaacgaagtaaatacagtaattcttctaggaggacacctggcagatctgattgg
gatgatggaagatgggaatgggaagataccccacaccgagatagtcgttcttggactgat
aggcaacatcgaccttcaccatccccaatgcttgttggaacatcaccggatgcacgactg
gtgtccccctggttgggtggtcatacacctcattcttcggggcctgctgcttcaccttgg
gattatgtatctccttctcctgtcccaatacgtgcttctggatcatcagctcggtcatca
aattcttatcctggtggaaggagttcacgaccgatttatgaggatggagaagctgataaa
agtccttcagccaaagaacaaagcaatgagattactgaaaaaatgcatttagagatggaa
tacaattctgaccgtgcatggtatgacagagaagaaggtaacacaatgtttgatagtgat
acctcatcattttaccttggggacgatgcttctttccaaaagaaagaggctgagttggct
aagagactggttcggaaggatggaacacgaatgacacttgcacagagcaaaaagttgtca
caattggctgcagataatgttcaatgggaagaccgccaacttttgagatctggggcagtt
cggggtactgaggtgcaaacagaattcgaggatgaggatgagcgcaaggttattcttctt
gtccatgatacaaaacctccattcttggatgggagggttgtttttacaaagcaagcggat
cccataatgcccttgaaagatcctacatccgatatggctataatatcacgcaaaggatca
gccttggttcgggaaattcgtgagaaacagagttcgaataagtcacgtcagcggttttgg
gagcttgcaggatcaaaacttggtgatatactgggtgtggaaaaaacagcagagcagatt
gatgcagatacggctgtagtaggggaggaaggagaagttgactttaaggaggaagcaaaa
tttgcacaacacatgaaagagaagggagaagcagtgagtgattttgcaaagtcaaagacc
ttagcacaacagcgacaatatttgccaatatattctgtacgagaggagttactgcaggtt
attcgtgaaaatcaaataattgttgtagttggggaaactggttcaggaaagacaactcaa
cttacacagtatctgcatgaagatggatacactacaaatggtattgttggttgcactcaa
ccaagacgtgtggcagctatgagtgttgctaagcgagttagtgaagagatgaaaactgag
ctaggtgataaggttggttatgccatcaggtttgaggatgtgactggggcaaacaccata
ataaagtacatgactgatggagtgctcctacgtgagacgctgaaagattcagatctagaa
aaatatcgtgtgattgttatggatgaagctcatgagagatcactgagcactgatgtactc
ttcgggatactgaagagagttgttgcacaacgtcgtgacttcaagctcattgtcacatct
gcgaccctaaatgcacagaagttctccaacttctttggaagtgtaccaatattcaacatt
cctggaaggacttttcctgtaaatattctgtacagtaagaccccgtgtgaagactatgtt
gaagctgcagtgaagcaggccatggctatccacattaccagccctccgggtgacattcta
atattcatgactggccaagatgagattgaaacaacctgctatgcacttgcagagcgcatg
gaacagcttgtatcttccactaagaagggagttccccaactcttaatactccccatatac
tcgcagttgccagctgacttgcaagccaagatctttcagaaagctgaagatggggctcgc
aaatgcattgttgcgaccaacattgcagaaacttcgttgactgtggatggtatcttttat
gtcattgatacaggctatggtaaaatgaaagtgtacaatcctaggatgggtatggatgct
cttcaagtgtttccagttagtcgagctgctgccgatcagcgtgctggtcgtgcagggagg
acaggaccaggtacatgttataggctatatacggatagtgcttaccagaatgagatgctg
cctaaccctgtgcctgagatccaaagaactaatcttggcaatgtggttctattgctcaag
tcccttaagattgaaaacctattggactttgatttcatggacccacctccacaggataac
atccttaattccatgtatcagttgtgggttttaggtgcattgaacaatgttgggagcttg
acagatcttggctggaagatggttgaattccctttggatccaccacttgctaagatgctc
cttatgggagagcaactagcatgtttgaatgaggttctgaccgttgtgtccatgttatcg
gtgccatcagtgttcttccggccaaaagatagggcagaggagagtgatgcagcaagggag
aaattttttgtgccagaatcagatcacttgacgctcctcaatatatatcagcagtggaag
gccaaccagtacaggggagactggtgcaatgatcacttcttgcaagttaaagggctgagg
aaggctagggaggtgagatcacagttgctggatatactcaaggcccttaaaatcccactc
acatcttgcgggcctgattgggatgttgtaaggaaagccatctgttctgcttattttcat
aatgctgcgcggttgaaaggggtaggggagtatgttaattgcaggaatggaatgccatgc
catctccaccctagtagtgctctctatggtcttggctatactccagattatgtagtgtat
catgagttaatattgacgactaaggagtacatgcagtgtgcaactgcagtggagccccag
tggttggcagagctaggccccatgtttttctcagtgaaagattcagatacatcgatgctt
gaacataagaaaaaacagaaggaagagaaaactgcaatggaggaggagatggagaatttg
aggaagagtcaagcagaggaagagagggagaacaagaagcgagagaaggagaagagggtg
agccaacagcagcaggtgtccatgccaggaatacgacagggcacatccacatatctccgg
cctaagaagattggcttgtaa
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