Macadamia integrifolia (macadamia nut): 122093766
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Entry
122093766 CDS
T07436
Name
(RefSeq) poly(A)-specific ribonuclease PARN-like
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
ming
Macadamia integrifolia (macadamia nut)
Pathway
ming03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ming00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
122093766
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ming03019
]
122093766
Enzymes [BR:
ming01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
122093766
Messenger RNA biogenesis [BR:
ming03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
122093766
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1
GlcNAc-1_reg
PHD_ash2p_like
Motif
Other DBs
NCBI-GeneID:
122093766
NCBI-ProteinID:
XP_042520170
LinkDB
All DBs
Position
11:27905772..27913168
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AA seq
725 aa
AA seq
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MSRNMKKAPIGRALALVRQGSSFTWRSFSSATSTFALKKVTKTNFDSALEDLRGHVRDAD
FVAIDLEMTGVTSAPWRESFEFDRYDVRYLKVKDSVEKFAVVQFGVCPFRWDSSKESFVA
HPHNFYVFPRKELPFDGPCSEFLCQTTSIDFLAKYQFDFNACIHEGISYLSRTQEAEAWR
HFNFDYEGELSNLGYQFKEVRDVPLNSTVDVLFTERVKNRFREWRDGLLQNRNGGFQFEG
NSNDSKQTFQTVFFKMRPAIMLKGFTSHQLRLIQLVIRQQFKDLAYVYVYGEDSVEQKLV
VYTDSEDDKHLLMQEVKDGLHKEAERKIKAAVGFRHVIDLLSSERKLLIGHNCFLDIAHI
YSKFFAPLPSAVEEFVSSLHEKFPYVVDTKHLLRTANAIQNLMKRQSTSLSSAFAHLCPE
IACVTKGSALPHLSYLKVEVQVDDMRSSNWNSGAKHEAGYDAFMTGCVFAQACSRIGIDF
KLHSPSTVLAHNEKLQKYMNLLYLSWNNGAIIDLSSGKVTPESSAFHFIKHRYPEVVFKN
IVLFWGFPSKLKPRELRECISKVFGSESVTTIYYLDKTASFIQFSKEEFVNEFLVLKETL
ERNNDAISVLHPFSKLLEGGHTHAANYEVYKEICSSAISRILFADQANSVCIKSRDELDN
QELGSSSGVSGAGNSISSFVTKSESTKSNDVLNDPSYRHFSCDKMKDALYIIKSQLGKQS
RNTKL
NT seq
2178 nt
NT seq
+upstream
nt +downstream
nt
atgagccgaaacatgaagaaagcacccataggaagagctttagctctagtacgccaaggc
tcttctttcacctggaggtcattctcctctgcaacatccaccttcgctttgaagaaagtg
accaaaaccaatttcgattcagcccttgaagatctccgaggccatgttcgagacgctgat
tttgtcgccattgatctcgagatgaccggagtcacgagcgctccatggcgagaatctttc
gagtttgaccgctacgatgttcggtatctcaaagtgaaggactctgtcgagaaatttgcc
gtcgttcagttcggtgtatgccccttccgctgggattcttccaaggaatcgttcgttgct
catccgcacaatttctatgtgtttcctcgcaaagagcttcctttcgatggcccatgtagt
gaattcctttgccagacaacctcaattgacttcttggccaaataccaatttgacttcaat
gcttgcatccatgaaggaatatcttatttatccagaacacaggaagctgaagcttggcgt
cacttcaattttgattatgagggtgaattatctaatttgggatatcagtttaaagaagtc
agagatgtaccattgaatagtactgtggatgttcttttcactgagagggtaaagaacaga
tttagagaatggcgtgatggattgttacagaacagaaatggaggttttcagtttgagggg
aactcaaatgactcgaaacaaacatttcaaactgttttcttcaagatgcgtccagctatt
atgctaaaggggttcacttctcatcaactgagattgattcagctggtcataagacaacaa
ttcaaagatcttgcttatgtttatgtgtatggtgaagattccgttgaacaaaaacttgtt
gtttacacagactctgaggatgataaacacctgcttatgcaagaggtaaaggatgggtta
cacaaggaagcggagaggaaaattaaagctgcggttggctttcgacatgttattgacctt
ctttcctcggaaaggaagttgcttattggtcataattgctttttagatattgcacacata
tacagcaaattttttgctccactcccttcagctgtggaagaatttgtatcctccttacat
gaaaagttcccatacgttgttgacacgaagcacctcttgaggactgccaatgcaattcag
aatttgatgaagagacagagcacatcactatcttcagcttttgcccatttgtgtcctgaa
attgcttgtgttacaaagggttctgctttgcctcatctctcctatctgaaggttgaggtt
caagtggatgacatgaggtcctctaactggaactcaggagctaagcatgaagctggttat
gatgcttttatgactggatgtgtctttgctcaggcatgcagtcgtataggtattgatttc
aaactccattccccatcaacagtgttggcccacaatgagaagcttcagaagtacatgaac
cttctatatctcagctggaataatggagccattattgatttaagcagtgggaaggtgact
ccagagtcctcggctttccatttcatcaaacatagatatccagaggtggttttcaaaaat
attgttttgttctggggatttccctccaagctgaaaccccgagagttgagagagtgcatc
tctaaggtatttggctctgagtcagttaccaccatctactacttggataaaactgcgtca
ttcatccaattcagcaaggaagaatttgtgaatgaattcctagtgctgaaggaaacgcta
gaaagaaataatgatgcaatctcagtgttgcaccctttctccaaattattagaaggtggg
catacccatgctgcgaattatgaggtttataaagagatttgcagctctgcgatatcaaga
atcttatttgcagatcaagccaattctgtttgtattaagtcaagggatgaattggataat
caagaattgggaagttccagtggggtgagtggagctgggaactcaatttcaagttttgtc
accaaaagtgaatcaacgaagagtaatgatgtgttaaatgatccatcatatcgccatttc
tcatgtgataaaatgaaggatgctttgtatatcattaagtctcagctagggaaacagtca
aggaatacaaaattatga
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